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View Structure Prediction Details

Protein: YER128W
Organism: Saccharomyces cerevisiae
Length: 203 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YER128W.

Description E-value Query
Range
Subject
Range
VFA1_YEAST - VPS4-associated protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VFA1 PE=1 SV=1
YER128W - Putative protein of unknown function
gi|151944843 - gi|151944843|gb|EDN63102.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|207345855 - gi|207345855|gb|EDZ72539.1| YER128Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|190405690 - gi|190405690|gb|EDV08957.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
3.0E-96 [1..203] [1..203]
YNH1_SCHPO - UPF0589 protein C32H8.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC32H8.01c PE=...
SPBC32H8.01c - conserved fungal protein
9.0E-24 [3..76] [13..76]

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Predicted Domain #1
Region A:
Residues: [1-101]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINEYVARKV ALKDMQPCAI CSKPSTTVLY NASGPDWLYT CEIHLQDNPQ FVIPLYSTEY  60
   61 NEAVAQLKLV KGKMDSLTSA QTQLGSWDGW VTKIFSKKEK E

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.850 N/A N/A a.24.17 Group V grass pollen allergen

Predicted Domain #2
Region A:
Residues: [102-203]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNNSKDPDPT TTDSTDTSPQ AKNDAEILSE TKKQYSKILD KVTELQRKNR KYELAKIMFE  60
   61 SRLLRKRTEQ VNRERYLKEQ ENYSNTDPEE LLRKHVFPSV PK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.826 a.23.1 HSC20 (HSCB), C-terminal oligomerisation domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle