| Protein: | LCP5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 357 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LCP5.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..357] | [1..357] |
|
|
3.0E-61 | [4..251] | [212..447] |
|
|
9.0E-59 | [5..314] | [11..269] |
|
|
6.0E-58 | [1..310] | [6..266] |
|
|
1.0E-57 | [38..341] | [6..286] |
|
|
4.0E-57 | [4..251] | [216..457] |
|
|
2.0E-56 | [6..251] | [1..240] |
|
Region A: Residues: [1-129] |
1 11 21 31 41 51
| | | | | |
1 MSELNALLKD INGSLTATSE SLERLSGIYS NSATDEIPES NQLHEHLFYD AKKPAEKVSL 60
61 LSLKNGSMLG YINSLLMLIG NRLDDECKDP SAMDARERSI QHRVVLERGV KPLEKKLAYQ 120
121 LDKLTRAYV
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.245 | 0.050 | rRNA modification | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.409 | 0.025 | rRNA modification | a.75.1 | Ribosomal protein S7 |
| View | Download | 0.293 | 0.018 | rRNA modification | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.321 | 0.007 | rRNA modification | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.220 | 0.004 | rRNA modification | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |
| View | Download | 0.409 | N/A | N/A | a.75.1 | Ribosomal protein S7 |
| View | Download | 0.321 | N/A | N/A | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.293 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.245 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.220 | N/A | N/A | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |
| View | Download | 0.205 | N/A | N/A | d.82.2 | Frataxin-like |
| View | Download | 0.202 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
|
Region A: Residues: [130-357] |
1 11 21 31 41 51
| | | | | |
1 KMEKEYKDAE KRALEKSTLV NHSGNDDSED DESSEDEIAY RPNTSGIINT NKKSSAYRVE 60
61 ETAKQENGEE NDDNETGVYK PPKITAVLPP QQTHFEDRFD AREHKDRSNK SRMQAMEEYI 120
121 RESSDQPDWS ASIGADIVNH GRGGIKSLRD TEKERRVTSF EEDNFTRLNI TNKAEKRKQK 180
181 QRERNARMNV IGGEDFGIFS SKRKLEDSTS RRGAKKTRSA WDRAQRRL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [255-357] |
1 11 21 31 41 51
| | | | | |
1 QPDWSASIGA DIVNHGRGGI KSLRDTEKER RVTSFEEDNF TRLNITNKAE KRKQKQRERN 60
61 ARMNVIGGED FGIFSSKRKL EDSTSRRGAK KTRSAWDRAQ RRL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
