| Protein: | UBP9 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 754 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBP9.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..754] | [1..754] |
|
|
2.0E-86 | [170..736] | [230..779] |
|
|
1.0E-83 | [336..665] | [38..376] |
|
|
7.0E-78 | [236..665] | [149..597] |
|
|
1.0E-76 | [41..691] | [228..887] |
|
Region A: Residues: [1-74] |
1 11 21 31 41 51
| | | | | |
1 MIKRWLSVNR KKSHPEKNTQ GNDEINRKAT SLKKTKGSGD PSIAKSPSAK SSTSSIPSNL 60
61 ASHERRSKFS SQTD
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.292 | a.4.1 | Homeodomain-like |
| View | Download | 0.207 | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [75-181] |
1 11 21 31 41 51
| | | | | |
1 NLAGNKHYHE HYHNMASTSD EREYDSSTTY EDRAFDTESS ILFTTITDLM PYGDGSNKVF 60
61 GYENFGNTCY CNSVLQCLYN IPEFRCNVLR YPERVAAVNR IRKSDLK
|
| Detection Method: | |
| Confidence: | 14.823909 |
| Match: | PF00442 |
| Description: | No description for PF00442 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [182-286] |
1 11 21 31 41 51
| | | | | |
1 GSKIRVFTNE SFETSTNSGN SNTGYQSNDN EDAHNHHHLQ QSDQDNSSSS TQEKQNNFER 60
61 KRNSFMGFGK DKSNYKDSAK KDDNNEMERP QPVHTVVMAS DTLTE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.241 | a.1.1 | Globin-like |
| View | Download | 0.218 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.644 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.457 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.425 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.333 | b.24.1 | Hyaluronate lyase-like, C-terminal domain |
| View | Download | 0.324 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.320 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.252 | c.55.5 | MTH1175-like |
|
Region A: Residues: [287-530] |
1 11 21 31 41 51
| | | | | |
1 KLHEGCKKII VGRPLLKQSD SLSKASTTDC QANSHCQCDS QGSRITSVDD DVLVNPESCN 60
61 DAVNNSNNNK ENTFPTSEQR KKAALIRGPV LNVDHLLYPT EEATLYNGLK DIFESITENL 120
121 SLTGIVSPTE FVKILKKENV LFNTMMQQDA HEFLNFLLND FSEYIQRNNP RMRFGPQKTD 180
181 NSNDNFITDL FKGTLTNRIK CLTCDNITSR DEPFLDFPIE VQGDEETDIQ KMLKSYHQRE 240
241 MLNG
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [531-596] |
1 11 21 31 41 51
| | | | | |
1 VNKFYCNKCY GLQEAERMVG LKQLPHILSL HLKRFKYSEE QKSNIKLFNK ILYPLTLDVS 60
61 STFNTS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.756 | b.38.1 | Sm-like ribonucleoproteins |
| View | Download | 0.747 | b.34.5 | Translation proteins SH3-like domain |
| View | Download | 0.698 | d.18.1 | ssDNA-binding transcriptional regulator domain |
| View | Download | 0.688 | b.34.5 | Translation proteins SH3-like domain |
| View | Download | 0.672 | b.38.1 | Sm-like ribonucleoproteins |
| View | Download | 0.634 | d.9.2 | Description not found. |
| View | Download | 0.633 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.633 | b.38.1 | Sm-like ribonucleoproteins |
| View | Download | 0.613 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.599 | b.4.1 | HSP40/DnaJ peptide-binding domain |
| View | Download | 0.597 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.572 | b.38.1 | Sm-like ribonucleoproteins |
| View | Download | 0.566 | d.95.1 | Glucose permease domain IIB |
| View | Download | 0.553 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.543 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.540 | b.38.1 | Sm-like ribonucleoproteins |
| View | Download | 0.540 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.529 | d.95.1 | Glucose permease domain IIB |
| View | Download | 0.505 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.459 | b.38.1 | Sm-like ribonucleoproteins |
| View | Download | 0.443 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.432 | b.38.1 | Sm-like ribonucleoproteins |
| View | Download | 0.429 | b.38.1 | Sm-like ribonucleoproteins |
| View | Download | 0.429 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.423 | b.84.1 | Single hybrid motif |
| View | Download | 0.402 | d.17.2 | Copper amine oxidase, domains 1 and 2 |
| View | Download | 0.390 | b.93.1 | Epsilon subunit of F1F0-ATP synthase N-terminal domain |
| View | Download | 0.389 | b.40.2 | Bacterial enterotoxins |
| View | Download | 0.378 | b.93.1 | Epsilon subunit of F1F0-ATP synthase N-terminal domain |
| View | Download | 0.376 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.369 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.363 | g.27.1 | Fibronectin type I module |
| View | Download | 0.350 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.340 | g.51.1 | Zn-binding domains of ADDBP |
| View | Download | 0.339 | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
| View | Download | 0.336 | d.17.1 | Cystatin/monellin |
| View | Download | 0.334 | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.331 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.330 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.314 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.314 | g.51.1 | Zn-binding domains of ADDBP |
| View | Download | 0.312 | d.17.1 | Cystatin/monellin |
| View | Download | 0.304 | d.17.1 | Cystatin/monellin |
| View | Download | 0.298 | d.17.2 | Copper amine oxidase, domains 1 and 2 |
| View | Download | 0.297 | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
| View | Download | 0.292 | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
| View | Download | 0.285 | b.1.5 | Transglutaminase, two C-terminal domains |
| View | Download | 0.273 | d.17.1 | Cystatin/monellin |
| View | Download | 0.269 | d.198.1 | Type III secretory system chaperone |
| View | Download | 0.266 | b.56.1 | Transcription factor IIA (TFIIA), beta-barrel domain |
| View | Download | 0.266 | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.263 | b.56.1 | Transcription factor IIA (TFIIA), beta-barrel domain |
| View | Download | 0.258 | d.204.1 | Ribosome binding protein Y (YfiA homologue) |
| View | Download | 0.247 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.243 | b.55.1 | PH domain-like |
| View | Download | 0.226 | d.17.1 | Cystatin/monellin |
| View | Download | 0.218 | d.17.1 | Cystatin/monellin |
| View | Download | 0.218 | d.17.1 | Cystatin/monellin |
| View | Download | 0.216 | b.1.1 | Immunoglobulin |
| View | Download | 0.213 | d.17.1 | Cystatin/monellin |
| View | Download | 0.207 | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.201 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.201 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.201 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.200 | d.17.1 | Cystatin/monellin |
| View | Download | 0.200 | d.17.1 | Cystatin/monellin |
|
Region A: Residues: [597-687] |
1 11 21 31 41 51
| | | | | |
1 VYKKYELSGV VIHMGSGPQH GHYVCICRNE KFGWLLYDDE TVESIKEETV LQFTGHPGDQ 60
61 TTAYVLFYKE TQADKTENQN ENIDTSSQDQ M
|
| Detection Method: | |
| Confidence: | 28.958607 |
| Match: | PF00443 |
| Description: | Ubiquitin carboxyl-terminal hydrolase |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [688-754] |
1 11 21 31 41 51
| | | | | |
1 QTDNNIEQLI KCDDWLRDRK LRAAANIERK KTLGNIPEVK TAETKTPLND KKRNKQKRKS 60
61 RILSFIK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.644 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.425 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.324 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.457 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.320 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.306 | a.64.1 | Saposin |
| View | Download | 0.300 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.272 | a.4.13 | Sigma3 and sigma4 domains of RNA polymerase sigma factors |
| View | Download | 0.251 | a.118.1 | ARM repeat |
| View | Download | 0.250 | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.224 | g.34.1 | HIV-1 VPU cytoplasmic domain |
| View | Download | 0.219 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.205 | a.7.7 | BAG domain |
| View | Download | 0.202 | a.4.1 | Homeodomain-like |
| View | Download | 0.202 | a.28.2 | Colicin E immunity proteins |
