| Protein: | SHC1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 512 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SHC1.
| Description | E-value | Query Range |
Subject Range |
|
|
1.0E-99 | [1..512] | [1..512] |
|
|
4.0E-73 | [70..511] | [3..451] |
|
|
5.0E-63 | [74..511] | [396..830] |
|
|
1.0E-58 | [108..507] | [43..424] |
|
|
7.0E-54 | [160..507] | [2..316] |
|
Region A: Residues: [1-152] |
1 11 21 31 41 51
| | | | | |
1 MSMTICSNTP GAYPEIGAYN EVDKQLESSG FSSDSSLILN KPEVRQYWSS VSSHISRSGD 60
61 VFTNDKEKIS SSIGEDAMDI DASPSLIEKY NSFPTRKILP EQDEFENDVE DDASSSLKEK 120
121 SQGSCEIEIA SEISSEILNG TSADGNSEFH DF
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [153-336] |
1 11 21 31 41 51
| | | | | |
1 AEPPPSQNES VALSFSQSND LDFLNNPSGS GSSNDINRST SSISLPRHVS LDFNVYNSLC 60
61 LTNEVTASES HNVAKFHLGK KNKKSLLPRW KTIEMYGEVV KKTQDIYSNF QYAQYILRVG 120
121 LDTEKLHELV KELEDESNSF SVDSLKEYLV NDAKVILKKL SAVGYPDAQY LLGDAYSSGV 180
181 FGKI
|
| Detection Method: | |
| Confidence: | 4.0 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.736853224379565 | bayes_pls_golite062009 |
| protein binding | 0.582813988794606 | bayes_pls_golite062009 |
|
Region A: Residues: [337-447] |
1 11 21 31 41 51
| | | | | |
1 KNRRAFLLFS AAAKRMHIES VYRTAICYEC GLGVTRNAPK AVNFLTFAAT KNHPAAMYKL 60
61 GVYSYHGLMG LPDDILTKMD GYRWLRRATS MASSFVCGAP FELANIYMTG Y
|
| Detection Method: | |
| Confidence: | 4.0 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [448-512] |
1 11 21 31 41 51
| | | | | |
1 KDLIISDPDY AMALYEKAAA LGHTESARIL EDARRSGGFV SRGHPPSAQK YHKTSHEAVA 60
61 AKKLI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.639 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.470 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.582 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.551 | d.79.3 | L30e-like |
| View | Download | 0.440 | a.81.1 | N-terminal domain of DnaB helicase |
| View | Download | 0.408 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.299 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.298 | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.297 | d.58.36 | Sulfite reductase, domains 1 and 3 |
| View | Download | 0.297 | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.292 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.271 | a.64.1 | Saposin |
| View | Download | 0.253 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.250 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.247 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.246 | a.77.1 | DEATH domain |
| View | Download | 0.238 | d.58.36 | Sulfite reductase, domains 1 and 3 |
| View | Download | 0.235 | d.58.17 | Metal-binding domain |
| View | Download | 0.231 | a.157.1 | Skp1 dimerisation domain-like |
| View | Download | 0.230 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.229 | a.101.1 | Uteroglobin-like |
| View | Download | 0.226 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.224 | d.58.49 | YajQ-like |
| View | Download | 0.220 | a.7.7 | BAG domain |
| View | Download | 0.215 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.214 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.206 | d.58.17 | Metal-binding domain |
