YRC Public Data Repository - Protein Structure Prediction

Protein:	SBH1
Organism:	Saccharomyces cerevisiae
Length:	82 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SBH1.

Description	E-value	Query Range	Subject Range
gi\|18000273 - gi\|18000273\|gb\|AAL54898.1\|AF159543_1 transport protein Sec61 beta subunit [Lapemis hardwickii]	107.0	[0..2]	[76..19]
gi\|50736212 - gi\|50736212\|ref\|XP_419082.1\| PREDICTED: similar to Protein transport protein SEC61 beta subunit [Gal...	105.0	[0..2]	[76..19]
gi\|109131069 - gi\|109131069\|ref\|XP_001102187.1\| PREDICTED: Sec61 beta subunit [Macaca mulatta]	105.0	[0..2]	[76..19]
gi\|109476493, gi... - gi\|27714473\|ref\|XP_216400.1\| PREDICTED: similar to Protein transport protein Sec61 beta subunit [Rat...	105.0	[0..2]	[76..19]
SC61B_PONAB - Protein transport protein Sec61 subunit beta OS=Pongo abelii GN=SEC61B PE=3 SV=3 ENSPTRT00000039176 - null tr\|G3H7H4\|G3H7H4... - Protein transport protein Sec61 subunit beta OS=Cricetulus griseus GN=I79_006305 PE=4 SV=1 CCDS6741.1_1 - null SC61B_PONPY - Protein transport protein Sec61 subunit beta - Pongo pygmaeus (Orangutan) SEC61B - Sec61 beta subunit SC61B_CANLF - Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris GN=SEC61B PE=1 SV=2 gi\|149740327 - gi\|149740327\|ref\|XP_001504106.1\| PREDICTED: similar to protein translocation complex beta subunit [E... gi\|109110979 - gi\|109110979\|ref\|XP_001109722.1\| PREDICTED: Sec61 beta subunit [Macaca mulatta] ENSCJAT00000021945 - null	105.0	[0..2]	[76..19]
gi\|84202411, gi\|... - gi\|84202411\|gb\|AAI11653.1\| Sec61 beta subunit [Bos taurus], gi\|115497008\|ref\|NP_001068760.1\| Sec61 b...	104.0	[0..2]	[76..19]
SC61B_MOUSE - Protein transport protein Sec61 subunit beta OS=Mus musculus GN=Sec61b PE=1 SV=3 gi\|51980602 - gb\|AAH82171.1\| Unknown (protein for MGC:98571) [Xenopus laevis]	103.0	[0..2]	[76..19]
gi\|77748125, gi\|... - gi\|77748125\|gb\|AAI06322.1\| Sec61b protein [Xenopus laevis], gi\|27370895\|gb\|AAH41270.1\| Sec61b protei...	100.0	[0..2]	[76..19]

Back

Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSPTPPGGQ RTLQKRKQGS SQKVAASAPK KNTNSNNSIL KIYSDEATGL RVDPLVVLFL  60
   61 AVGFIFSVVA LHVISKVAGK LF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.502	g.52.1	Inhibitor of apoptosis (IAP) repeat
View	Download	0.502	g.52.1	Inhibitor of apoptosis (IAP) repeat
View	Download	0.422	a.118.1	ARM repeat
View	Download	0.359	g.52.1	Inhibitor of apoptosis (IAP) repeat
View	Download	0.344	d.50.3	PI-Pfui intein middle domain
View	Download	0.344	d.50.3	PI-Pfui intein middle domain
View	Download	0.310	d.58.3	Protease propeptides/inhibitors
View	Download	0.310	d.58.3	Protease propeptides/inhibitors
View	Download	0.274	g.52.1	Inhibitor of apoptosis (IAP) repeat
View	Download	0.269	d.50.3	PI-Pfui intein middle domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits