YRC Public Data Repository - Protein Structure Prediction

Protein:	RRT13
Organism:	Saccharomyces cerevisiae
Length:	185 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRT13.

Description	E-value	Query Range	Subject Range
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	5.0E-55	[2..185]	[1149..1356]
HETE1_PODAS - Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=3 SV=1	1.0E-50	[3..183]	[1001..1205]
gi\|72160460, gi\|... - gi\|72160460\|ref\|YP_288117.1\| WD-40 repeat-containing tyrosine protein kinase [Thermobifida fusca YX]... PKWA_THECU - Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1	3.0E-50	[4..184]	[494..697]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKCLYILSGH TDRIYSTIYD HERKRCISAS MDTTIRIWDL ENIRNNGECS YATNSASPCA  60
   61 KILGAMYTLR GHRALVGLLG LSDKFLVSAS VDGSIRCWDA NTYFLKHFFD HTQLNTITAL 120
  121 HVSDEVLVSG SEGLLNIYDL NSGLLVRSDT LSGADNVWNV SFKDNTLVAA VERDKRNLLE 180
  181 ILDFS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	86.70927
Match:	1erjA_
Description:	Tup1, C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits