YRC Public Data Repository - Protein Structure Prediction

Protein:	RSM18
Organism:	Saccharomyces cerevisiae
Length:	202 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSM18.

Description	E-value	Query Range	Subject Range
gi\|7440479 - gi\|7440479\|pir\|\|E71370 probable ribosomal protein S18 (rpsR) - syphilis spirochete RS18_TREPA - 30S ribosomal protein S18 OS=Treponema pallidum GN=rpsR PE=3 SV=1 RS18_TREPS - 30S ribosomal protein S18 OS=Treponema pallidum subsp. pallidum (strain SS14) GN=rpsR PE=3 SV=1 RS18_TREPA - 30S ribosomal protein S18 OS=Treponema pallidum (strain Nichols) GN=rpsR PE=3 SV=1	1.0E-23	[114..202]	[6..93]
mRpS18B-PB, mRpS... - The gene mitochondrial ribosomal protein S18B is referred to in FlyBase by the symbol Dmel\mRpS18B (... gi\|220954374, gi... - gi\|220954374\|gb\|ACL89730.1\| mRpS18B-PA [synthetic construct], gi\|220944418\|gb\|ACL84752.1\| mRpS18B-PA...	7.0E-22	[107..202]	[74..181]
RSM18_SCHPO - 37S ribosomal protein rsm18, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN... rsm18 - mitochondrial ribosomal protein subunit S18	3.0E-20	[105..202]	[58..155]
RS18_STAAN - 30S ribosomal protein S18 OS=Staphylococcus aureus (strain N315) GN=rpsR PE=1 SV=1 RS18_STAAB - 30S ribosomal protein S18 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rpsR PE=3 SV=1 RS18_STAAW - 30S ribosomal protein S18 OS=Staphylococcus aureus (strain MW2) GN=rpsR PE=3 SV=1 RS18_STAA2 - 30S ribosomal protein S18 OS=Staphylococcus aureus (strain JH1) GN=rpsR PE=3 SV=1 RS18_STAA9 - 30S ribosomal protein S18 OS=Staphylococcus aureus (strain JH9) GN=rpsR PE=3 SV=1 RS18_STAAM - 30S ribosomal protein S18 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rpsR PE=3 SV=1 RS18_STAAT - 30S ribosomal protein S18 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rpsR PE=3 SV=1 RS18_STAA8 - 30S ribosomal protein S18 OS=Staphylococcus aureus (strain NCTC 8325) GN=rpsR PE=3 SV=1 RS18_STAA3 - 30S ribosomal protein S18 OS=Staphylococcus aureus (strain USA300) GN=rpsR PE=3 SV=1 gi\|227247384, gi... - gi\|227556113\|ref\|ZP_03986160.1\| 30S ribosomal protein S18 [Staphylococcus aureus subsp. aureus MN8],... gi\|227898142, gi... - gi\|227898142\|ref\|ZP_04015947.1\| 30S ribosomal protein S18 [Staphylococcus aureus subsp. aureus TCH60... gi\|251812469, gi... - gi\|251812469\|ref\|ZP_04826942.1\| 30S ribosomal protein S18 [Staphylococcus aureus subsp. aureus TCH70... gi\|253316532 - gi\|253316532\|ref\|ZP_04839745.1\| 30S ribosomal protein S18 [Staphylococcus aureus subsp. aureus str. ... gi\|253730731, gi... - gi\|253730731\|ref\|ZP_04864896.1\| 30S ribosomal protein S18 [Staphylococcus aureus subsp. aureus USA30... RS18_STAAE - 30S ribosomal protein S18 OS=Staphylococcus aureus (strain Newman) GN=rpsR PE=3 SV=1 gi\|253726910, gi... - gi\|253735110\|ref\|ZP_04869275.1\| 30S ribosomal protein S18 [Staphylococcus aureus subsp. aureus TCH13... gi\|255005162 - gi\|255005162\|ref\|ZP_05143763.2\| 30S ribosomal protein S18 [Staphylococcus aureus subsp. aureus Mu50-... gi\|87126925\|gb\|A... - ribosomal protein S18 [Staphylococcus aureus subsp. aureus USA300], ribosomal protein S18 [Staphyloc... RS18_STAA1 - 30S ribosomal protein S18 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rpsR PE=3 SV=1 RS18_STAAR - 30S ribosomal protein S18 OS=Staphylococcus aureus (strain MRSA252) GN=rpsR PE=3 SV=1 RS18_STAAS - 30S ribosomal protein S18 OS=Staphylococcus aureus (strain MSSA476) GN=rpsR PE=3 SV=1 gi\|25507763 - pir\|\|H89802 30S ribosomal protein S18 [imported] - Staphylococcus aureus (strain N315) RS18_STAAC - 30S ribosomal protein S18 OS=Staphylococcus aureus (strain COL) GN=rpsR PE=3 SV=1 gi\|269202015\|ref... - 30S ribosomal protein S18 [Staphylococcus aureus subsp. aureus ED98] gi\|221142675 - gi\|221142675\|ref\|ZP_03567168.1\| 30S ribosomal protein S18 [Staphylococcus aureus subsp. aureus str. ... gi\|221139493 - gi\|221139493\|ref\|ZP_03564292.1\| 30S ribosomal protein S18 [Staphylococcus aureus subsp. aureus str. ...	3.0E-20	[139..202]	[10..73]
RS18_CLOP1 - 30S ribosomal protein S18 OS=Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB... RS18_CLOPS - 30S ribosomal protein S18 OS=Clostridium perfringens (strain SM101 / Type A) GN=rpsR PE=3 SV=1 RS18_CLOPE - 30S ribosomal protein S18 OS=Clostridium perfringens GN=rpsR PE=3 SV=1 gi\|168207913, gi... - gi\|170660796\|gb\|EDT13479.1\| ribosomal protein S18 [Clostridium perfringens E str. JGS1987], gi\|16820... gi\|169298406, gi... - gi\|169343454\|ref\|ZP_02864454.1\| ribosomal protein S18 [Clostridium perfringens C str. JGS1495], gi\|1... gi\|182379953, gi... - gi\|182379953\|gb\|EDT77432.1\| ribosomal protein S18 [Clostridium perfringens NCTC 8239], gi\|168218034\|... RS18_CLOPE - 30S ribosomal protein S18 OS=Clostridium perfringens (strain 13 / Type A) GN=rpsR PE=3 SV=1 gi\|170713723, gi... - gi\|170713723\|gb\|EDT25905.1\| ribosomal protein S18 [Clostridium perfringens CPE str. F4969], gi\|16821... gi\|168211574, gi... - gi\|170710455\|gb\|EDT22637.1\| ribosomal protein S18 [Clostridium perfringens B str. ATCC 3626], gi\|168... gi\|182626399, gi... - gi\|182626399\|ref\|ZP_02954152.1\| ribosomal protein S18 [Clostridium perfringens D str. JGS1721], gi\|1...	3.0E-20	[130..202]	[3..75]
gi\|47019373, gi\|... - gi\|47092171\|ref\|ZP_00229963.1\| ribosomal protein S18 [Listeria monocytogenes str. 4b H7858], gi\|4701... gi\|255519953 - gi\|255519953\|ref\|ZP_05387190.1\| 30S ribosomal protein S18 [Listeria monocytogenes FSL J1-175] gi\|255030368 - gi\|255030368\|ref\|ZP_05302319.1\| 30S ribosomal protein S18 [Listeria monocytogenes LO28] gi\|255025177 - gi\|255025177\|ref\|ZP_05297163.1\| 30S ribosomal protein S18 [Listeria monocytogenes FSL J2-003] RS18_LISMF - 30S ribosomal protein S18 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rpsR PE=3 SV=1 gi\|255022435 - gi\|255022435\|ref\|ZP_05294421.1\| 30S ribosomal protein S18 [Listeria monocytogenes FSL J1-208] RS18_LISMO - 30S ribosomal protein S18 OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=rp... gi\|255017794 - gi\|255017794\|ref\|ZP_05289920.1\| 30S ribosomal protein S18 [Listeria monocytogenes FSL F2-515] RS18_LISIN - 30S ribosomal protein S18 OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=rpsR PE=3 SV=1 gi\|254992264 - gi\|254992264\|ref\|ZP_05274454.1\| 30S ribosomal protein S18 [Listeria monocytogenes FSL J2-064] gi\|47016459, gi\|... - gi\|47095114\|ref\|ZP_00232726.1\| ribosomal protein S18 [Listeria monocytogenes str. 1/2a F6854], gi\|47... gi\|254879868 - gi\|254879868\|ref\|ZP_05252578.1\| 30S ribosomal protein S18 [Listeria monocytogenes FSL J2-071] gi\|254851788 - gi\|254851788\|ref\|ZP_05241136.1\| 30S ribosomal protein S18 [Listeria monocytogenes FSL R2-503] gi\|254824725 - gi\|254824725\|ref\|ZP_05229726.1\| 30S ribosomal protein S18 [Listeria monocytogenes FSL J1-194] RS18_LISMC - 30S ribosomal protein S18 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rpsR PE=3 SV=1 RS18_LISMC - 30S ribosomal protein S18 OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=rpsR PE=3 SV=1 RS18_LISMO - 30S ribosomal protein S18 OS=Listeria monocytogenes GN=rpsR PE=3 SV=1 RS18_LISMH - 30S ribosomal protein S18 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rpsR PE=3 SV=1 RS18_LISW6 - 30S ribosomal protein S18 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC533... gi\|224498256 - gi\|224498256\|ref\|ZP_03666605.1\| 30S ribosomal protein S18 [Listeria monocytogenes Finland 1988] gi\|254899633, gi... - gi\|254899633\|ref\|ZP_05259557.1\| 30S ribosomal protein S18 [Listeria monocytogenes J0161], gi\|1531844... gi\|224503029 - gi\|224503029\|ref\|ZP_03671336.1\| 30S ribosomal protein S18 [Listeria monocytogenes FSL R2-561] gi\|254830661, gi... - gi\|254830661\|ref\|ZP_05235316.1\| 30S ribosomal protein S18 [Listeria monocytogenes 10403S], gi\|153198... gi\|254913164, gi... - gi\|254913164\|ref\|ZP_05263176.1\| 30S ribosomal protein S18 [Listeria monocytogenes J2818], gi\|1531926... gi\|254871893, gi... - gi\|254871893\|ref\|ZP_05244603.1\| 30S ribosomal protein S18 [Listeria monocytogenes FSL N1-017], gi\|15... RS18_LISIN - 30S ribosomal protein S18 OS=Listeria innocua GN=rpsR PE=3 SV=1 gi\|153176214, gi... - gi\|254827477\|ref\|ZP_05232164.1\| 30S ribosomal protein S18 [Listeria monocytogenes FSL N3-165], gi\|15... gi\|153181078, gi... - gi\|254937545\|ref\|ZP_05269242.1\| 30S ribosomal protein S18 [Listeria monocytogenes F6900], gi\|1531810... gi\|153200434, gi... - gi\|254930815\|ref\|ZP_05264174.1\| 30S ribosomal protein S18 [Listeria monocytogenes HPB2262], gi\|15320...	4.0E-20	[139..202]	[9..72]
RS18_GEOKA - 30S ribosomal protein S18 OS=Geobacillus kaustophilus (strain HTA426) GN=rpsR PE=3 SV=1 gi\|229497916, gi... - gi\|229497916\|ref\|ZP_04391615.1\| ribosomal protein S18 [Geobacillus sp. Y412MC52], gi\|229331342\|gb\|EE... gi\|196249872, gi... - gi\|196249872\|ref\|ZP_03148568.1\| ribosomal protein S18 [Geobacillus sp. G11MC16], gi\|196210748\|gb\|EDY... gi\|221086943, gi... - gi\|221086943\|ref\|ZP_03556483.1\| ribosomal protein S18 [Geobacillus sp. Y412MC61], gi\|220708996\|gb\|EE... RS18_GEOTN - 30S ribosomal protein S18 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rpsR PE=3 SV=2 RS18_GEOSE - 30S ribosomal protein S18 OS=Geobacillus stearothermophilus GN=rpsR PE=1 SV=2 RS18_GEOKA - 30S ribosomal protein S18 OS=Geobacillus kaustophilus GN=rpsR PE=3 SV=1	4.0E-20	[138..202]	[8..72]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	4.0E-20	[138..202]	[7..71]
gi\|15836485, gi\|... - gi\|8979326\|dbj\|BAA99160.1\| S18 ribosomal protein [Chlamydophila pneumoniae J138], gi\|15836485\|ref\|NP... gi\|33242320, gi\|... - gi\|33242320\|ref\|NP_877261.1\| 30S ribosomal protein S18 [Chlamydophila pneumoniae TW-183], gi\|3323683... gi\|7189819, gi\|1... - gi\|7189819\|gb\|AAF38692.1\| ribosomal protein S18 [Chlamydophila pneumoniae AR39], gi\|16752078\|ref\|NP_... gi\|4377277, gi\|1... - gi\|4377277\|gb\|AAD19090.1\| S18 Ribosomal Protein [Chlamydophila pneumoniae CWL029], gi\|15618861\|ref\|N... RS18_CHLPN - 30S ribosomal protein S18 OS=Chlamydia pneumoniae GN=rpsR PE=3 SV=1	6.0E-20	[133..202]	[7..76]
RS18_CHLMU - 30S ribosomal protein S18 OS=Chlamydia muridarum GN=rpsR PE=3 SV=2 RS18_CHLMU - 30S ribosomal protein S18 OS=Chlamydia muridarum (strain MoPn / Nigg) GN=rpsR PE=3 SV=2	1.0E-19	[129..202]	[2..75]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFYYAFKLHC RVTCWGKKYL GLLYILKYES IINSVTVLTK KARFYTKLRM FKMNATTGIK  60
   61 IQNGMQPIIK GAVSSTFKRA LYNFGIKEKK SVNIEMGRTQ QTKKIDQSLS KKLPKGTIY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [120-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPFDFSMGRI HLDRKYQANK NSNRNDIMKS GANPLEFYAR PRILSRYVTS TGRIQHRDIT  60
   61 GLSAKNQRRL SKAIRRCQAI GLM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.30103
Match:	1fjgR_
Description:	Ribosomal protein S18
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits