YRC Public Data Repository - Protein Structure Prediction

Protein:	SBH2
Organism:	Saccharomyces cerevisiae
Length:	88 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SBH2.

Description	E-value	Query Range	Subject Range
gi\|44981710 - gi\|44981710\|gb\|AAS51460.1\| ACR234Cp [Ashbya gossypii ATCC 10895] gi\|44981710, gi\|... - gi\|45185920\|ref\|NP_983636.1\| ACR234Cp [Ashbya gossypii ATCC 10895], gi\|44981710\|gb\|AAS51460.1\| ACR23...	113.0	[0..2]	[83..3]
SC61B_YARLI - Protein transport protein Sec61 subunit beta OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SBH... S61B_YARLI, SC61... - Protein transport protein Sec61 subunit beta OS=Yarrowia lipolytica GN=SBH1 PE=3 SV=1, (Q9HFC7) Prot...	112.0	[0..2]	[83..3]
SC61B_KLULA - Protein transport protein Sec61 subunit beta OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / ... SC61B_KLULA, S61... - Protein transport protein Sec61 subunit beta OS=Kluyveromyces lactis GN=SBH1 PE=3 SV=1, (Q8J2P4) Pro...	103.0	[0..4]	[83..3]
gi\|111058497 - gi\|111058497\|gb\|EAT79617.1\| hypothetical protein SNOG_12817 [Phaeosphaeria nodorum SN15]	100.0	[0..3]	[79..23]
gi\|18000273 - gi\|18000273\|gb\|AAL54898.1\|AF159543_1 transport protein Sec61 beta subunit [Lapemis hardwickii]	99.0	[0..2]	[85..19]
SBH1 - Beta subunit of the Sec61p ER translocation complex (Sec61p-Sss1p-Sbh1p); involved in protein transl... gi\|151944804 - gi\|151944804\|gb\|EDN63063.1\| conserved protein [Saccharomyces cerevisiae YJM789] SC6B1_YEAST - Protein transport protein SBH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SBH1 PE=1... gi\|190405651 - gi\|190405651\|gb\|EDV08918.1\| protein transport protein SEC61 beta 1 subunit [Saccharomyces cerevisiae...	99.0	[0..1]	[83..1]
gi\|62898329 - gi\|62898329\|dbj\|BAD97104.1\| protein translocation complex beta variant [Homo sapiens]	98.0	[0..2]	[85..13]
gi\|109476493, gi... - gi\|27714473\|ref\|XP_216400.1\| PREDICTED: similar to Protein transport protein Sec61 beta subunit [Rat...	98.0	[0..2]	[85..13]
gi\|169771025 - gi\|169771025\|ref\|XP_001819982.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83767841 - gi\|83767841\|dbj\|BAE57980.1\| unnamed protein product [Aspergillus oryzae]	98.0	[0..2]	[85..58]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASVPPGGQ RILQKRRQAQ SIKEKQAKQT PTSTRQAGYG GSSSSILKLY TDEANGFRVD  60
   61 SLVVLFLSVG FIFSVIALHL LTKFTHII

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.445	a.39.1	EF-hand
View	Download	0.306	d.52.8	Description not found.
View	Download	0.297	d.58.17	Metal-binding domain
View	Download	0.297	d.58.17	Metal-binding domain
View	Download	0.285	a.39.1	EF-hand
View	Download	0.284	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.282	d.50.3	PI-Pfui intein middle domain
View	Download	0.282	d.50.3	PI-Pfui intein middle domain
View	Download	0.241	a.156.1	S13-like H2TH domain
View	Download	0.236	a.46.1	Methionine synthase domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits