YRC Public Data Repository - Protein Structure Prediction

Protein:	HAT2
Organism:	Saccharomyces cerevisiae
Length:	401 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HAT2.

Description	E-value	Query Range	Subject Range
gi\|17225208 - gi\|17225208\|gb\|AAL37300.1\|AF323584_1 beta transducin-like protein HET-E2C*40 [Podospora anserina]	0.0	[5..398]	[856..1222]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	0.0	[4..398]	[1046..1413]
RBBP4 - retinoblastoma binding protein 4 RBBP4_MOUSE - Histone-binding protein RBBP4 OS=Mus musculus GN=Rbbp4 PE=1 SV=5 ENSCJAT00000001857 - null gi\|73949954, gi\|... - gi\|73949954\|ref\|XP_864445.1\| PREDICTED: similar to retinoblastoma binding protein 4 isoform 8 [Canis... gi\|123998073, gi... - gi\|60655333\|gb\|AAX32230.1\| retinoblastoma binding protein 4 [synthetic construct], gi\|60655331\|gb\|AA... ENSPTRT00000000953 - null RBBP4_BOVIN - Histone-binding protein RBBP4 OS=Bos taurus GN=RBBP4 PE=1 SV=3 gi\|157817007, gi... - gi\|197246471\|gb\|AAI68994.1\| Rbbp4 protein [Rattus norvegicus], gi\|157817007\|ref\|NP_001101382.1\| reti... gi\|449692 - gi\|449692\|prf\|\|1919423A retinoblastoma-binding protein tr\|M3WS50\|M3WS50... - RB binding protein 4, chromatin remodeling factor OS=Felis catus GN=RBBP4 PE=4 SV=1 gi\|126330240 - gi\|126330240\|ref\|XP_001366492.1\| PREDICTED: similar to retinoblastoma binding protein [Monodelphis d... gi\|109001615, gi... - gi\|109001618\|ref\|XP_001104493.1\| PREDICTED: retinoblastoma binding protein 4 isoform 7 [Macaca mulat...	0.0	[2..385]	[9..407]
RBBP4_CHICK - Histone-binding protein RBBP4 OS=Gallus gallus GN=RBBP4 PE=1 SV=3	0.0	[2..385]	[9..407]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[2..383]	[9..405]

Back

Predicted Domain #1

Region A:
Residues: [1-401]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENQEKPLSV DEEYDLWKSN VPLMYDFVSE TRLTWPSLTV QWLPTPVQEL DGGFIKQELI  60
   61 IGTHTSGEEE NYLKFAEINL PKEILSNEDP QEEAGEEYQS SLPAPRSNIR ITAKYEHEEE 120
  121 ITRARYMPQD PNIVATINGQ GTVFLYSRSE GLQSTLKFHK DNGYALSFST LVKGRLLSGS 180
  181 DDHTVALWEV GSGGDPTKPV RTWNDLHSDI INDNKWHNFN KDLFGTVSED SLLKINDVRA 240
  241 NNTTIDTVKC PQPFNTLAFS HHSSNLLAAA GMDSYVYLYD LRNMKEPLHH MSGHEDAVNN 300
  301 LEFSTHVDGV VVSSGSDNRL MMWDLKQIGA EQTPDDAEDG VPELIMVHAG HRSSVNDFDL 360
  361 NPQIPWLVAS AEEENILQVW KCSHSLPIVG GPPKVNKDII S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.39794
Match:	1gg2B_
Description:	beta1-subunit of the signal-transducing G protein heterotrimer
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits