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View Structure Prediction Details

Protein: VMA8
Organism: Saccharomyces cerevisiae
Length: 256 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VMA8.

Description E-value Query
Range		 Subject
Range
VMA8 - Subunit D of the eight-subunit V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase), a...
gi|207346112 - gi|207346112|gb|EDZ72709.1| YEL051Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|190405515 - gi|190405515|gb|EDV08782.1| vacuolar ATP synthase subunit D [Saccharomyces cerevisiae RM11-1a]
gi|151944661 - gi|151944661|gb|EDN62920.1| conserved protein [Saccharomyces cerevisiae YJM789]
VATD_YEAST - V-type proton ATPase subunit D OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VMA8 PE=1...
 1.0E-76 [1..256] [1..256]
vha-14 - Membrane-associated atpase gamma chain status:Confirmed UniProt:P34462 protein_id:CAA81600.1
 7.0E-73 [1..254] [1..252]
VATD_CANAL - V-type proton ATPase subunit D OS=Candida albicans GN=VMA8 PE=3 SV=1
gi|238881252 - gi|238881252|gb|EEQ44890.1| vacuolar ATP synthase subunit D [Candida albicans WO-1]
VATD_CANAL - V-type proton ATPase subunit D OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=VMA8 PE=3 SV=1
 9.0E-67 [2..252] [4..254]
VATD_NEUCR - V-type proton ATPase subunit D OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / D...
VATD_NEUCR - V-type proton ATPase subunit D OS=Neurospora crassa GN=vma-8 PE=2 SV=2
 1.0E-66 [1..246] [1..246]
FBpp0308493, FBp... - type=protein; loc=X:complement(2473322..2473548,2473610..2473973,2474029..2474146,2474207..2474247);...
 3.0E-66 [2..256] [3..249]
gi|5138993 - gi|5138993|gb|AAD40384.1| vacuolar H-ATPase subunit D [Homo sapiens]
 1.0E-65 [1..256] [1..246]
VATD_RABIT - V-type proton ATPase subunit D OS=Oryctolagus cuniculus GN=ATP6V1D PE=2 SV=1
 8.0E-65 [1..256] [1..246]
VATD_BOVIN - V-type proton ATPase subunit D OS=Bos taurus GN=ATP6V1D PE=1 SV=1
gi|517446 - gi|517446|gb|AAC48458.1| vacuolar H-ATPase subunit D
 4.0E-64 [1..256] [1..246]

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Predicted Domain #1
Region A:
Residues: [1-256] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGNREQVFP TRMTLGLMKT KLKGANQGYS LLKRKSEALT KRFRDITKRI DDAKQKMGRV  60
   61 MQTAAFSLAE VSYATGENIG YQVQESVSTA RFKVRARQEN VSGVYLSQFE SYIDPEINDF 120
  121 RLTGLGRGGQ QVQRAKEIYS RAVETLVELA SLQTAFIILD EVIKVTNRRV NAIEHVIIPR 180
  181 TENTIAYINS ELDELDREEF YRLKKVQEKK QNETAKLDAE MKLKRDRAEQ DASEVAADEE 240
  241 PQGETLVADQ EDDVIF

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 7.56
Match: 1av1A
Description: Apolipoprotein A-I
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle