YRC Public Data Repository - Protein Structure Prediction

Protein:	CUP5
Organism:	Saccharomyces cerevisiae
Length:	160 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CUP5.

Description	E-value	Query Range	Subject Range
gi\|240133937 - gi\|240133937\|gb\|EER33492.1\| vacuolar ATP synthase 16 kDa proteolipid subunit [Candida tropicalis MYA... VATL_CANTR - V-type proton ATPase 16 kDa proteolipid subunit OS=Candida tropicalis GN=VMA3 PE=3 SV=1 gi\|241953253, gi... - gi\|241953253\|ref\|XP_002419348.1\| vacuolar ATP synthase proteolipid subunit, putative [Candida dublin... orf19.5886 - CUP5 CGDID:CAL0002461 Assembly 19, Contig19-10236 (56479, 57259) CDS, translated using codon table 1... gi\|238880844 - gi\|238880844\|gb\|EEQ44482.1\| vacuolar ATP synthase 16 kDa proteolipid subunit [Candida albicans WO-1]	2.0E-40	[1..160]	[1..160]
VATL_SCHPO - V-type proton ATPase 16 kDa proteolipid subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 2484... vma3 - V-type ATPase subunit c	9.0E-39	[2..160]	[3..161]
gi\|190405537 - gi\|190405537\|gb\|EDV08804.1\| Cup5p [Saccharomyces cerevisiae RM11-1a] VATL1_YEAST - V-type proton ATPase subunit c OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VMA3 PE=1... gi\|151944682 - gi\|151944682\|gb\|EDN62941.1\| V-ATPase V0 sector subunit c [Saccharomyces cerevisiae YJM789] ORFP:5834 - YEL027W, Contig c354 38257-38739 reverse complement Sbay_5.42, Sbay_... - probable YEL027W CUP5 (48042-48524), null CUP5 - Proteolipid subunit of the vacuolar H(+)-ATPase V0 sector (subunit c; dicyclohexylcarbodiimide bindi...	1.0E-38	[1..160]	[1..160]
VATL_NEUCR - V-type proton ATPase 16 kDa proteolipid subunit OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A... VATL_NEUCR - V-type proton ATPase 16 kDa proteolipid subunit OS=Neurospora crassa GN=vma-3 PE=2 SV=1	3.0E-38	[1..160]	[1..161]
gi\|15146356 - gi\|15146356\|dbj\|BAB62811.1\| vacuolar membrane ATPase C [Aspergillus oryzae]	8.0E-38	[2..160]	[3..161]
VATL_TOBAC - V-type proton ATPase 16 kDa proteolipid subunit OS=Nicotiana tabacum PE=2 SV=1	1.0E-36	[5..157]	[7..162]
VATL_NEPNO - V-type proton ATPase 16 kDa proteolipid subunit OS=Nephrops norvegicus PE=2 SV=1	1.0E-36	[3..155]	[4..158]
gi\|113648765, gi... - gi\|77553127\|gb\|ABA95923.1\| V-type ATPase, C subunit [Oryza sativa (japonica cultivar-group)], gi\|125... gi\|15186772 - gi\|15186772\|gb\|AAK91135.1\|AF286464_1 V-ATPase subunit c [Porteresia coarctata]	3.0E-36	[5..157]	[7..162]
gi\|53734321 - gb\|AAH83987.1\| Unknown (protein for MGC:98082) [Xenopus laevis] VATL_MOUSE - V-type proton ATPase 16 kDa proteolipid subunit OS=Mus musculus GN=Atp6v0c PE=1 SV=1 VATL_RAT - V-type proton ATPase 16 kDa proteolipid subunit OS=Rattus norvegicus GN=Atp6v0c PE=2 SV=1	3.0E-36	[3..153]	[5..155]
VATL_SOLLC - V-type proton ATPase 16 kDa proteolipid subunit OS=Solanum lycopersicum PE=2 SV=1 gi\|76160939, gi\|... - gi\|78191432\|gb\|ABB29937.1\| vacuolar proton ATPase proteolipid subunit-like protein [Solanum tuberosu...	3.0E-36	[5..157]	[6..161]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTELCPVYAP FFGAIGCASA IIFTSLGAAY GTAKSGVGIC ATCVLRPDLL FKNIVPVIMA  60
   61 GIIAIYGLVV SVLVCYSLGQ K

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	20.318759
Match:	PF00137
Description:	ATP synthase subunit C

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [82-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QALYTGFIQL GAGLSVGLSG LAAGFAIGIV GDAGVRGSSQ QPRLFVGMIL ILIFAEVLGL  60
   61 YGLIVALLLN SRATQDVVC

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	20.769551
Match:	PF00137
Description:	ATP synthase subunit C

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits