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View Structure Prediction Details

Protein: MMS21
Organism: Saccharomyces cerevisiae
Length: 267 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MMS21.

Description E-value Query
Range
Subject
Range
gi|151944691 - gi|151944691|gb|EDN62950.1| methyl methanesulfonate sensitivity-related protein [Saccharomyces cerev...
MMS21 - SUMO ligase involved in chromosomal organization and DNA repair; essential subunit of the Mms21-Smc5...
NSE2_YEAST - E3 SUMO-protein ligase MMS21 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MMS21 PE=1 ...
0.0 [1..267] [1..267]
NSE2_SCHPO - E3 SUMO-protein ligase nse2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nse2 PE=1 SV=2
nse2 - Smc5-6 complex non-SMC subunit 2
0.002 [169..249] [181..259]

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Predicted Domain #1
Region A:
Residues: [1-166]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALNDNPIPK SVPLHPKSGK YFHNLHARDL SNIYQQCYKQ IDETINQLVD STSPSTIGIE  60
   61 EQVADITSTY KLLSTYESES NSFDEHIKDL KKNFKQSSDA CPQIDLSTWD KYRTGELTAP 120
  121 KLSELYLNMP TPEPATMVNN TDTLKILKVL PYIWNDPTCV IPDLQN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [167-267]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PADEDDLQIE GGKIELTCPI TCKPYEAPLI SRKCNHVFDR DGIQNYLQGY TTRDCPQAAC  60
   61 SQVVSMRDFV RDPIMELRCK IAKMKESQEQ DKRSSQAIDV L

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 3.065502
Match: PF02891
Description: MIZ zinc finger

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle