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View Structure Prediction Details

Protein: MMS21
Organism: Saccharomyces cerevisiae
Length: 267 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MMS21.

Description E-value Query
Range
Subject
Range
gi|151944691 - gi|151944691|gb|EDN62950.1| methyl methanesulfonate sensitivity-related protein [Saccharomyces cerev...
MMS21 - SUMO ligase involved in chromosomal organization and DNA repair; essential subunit of the Mms21-Smc5...
NSE2_YEAST - E3 SUMO-protein ligase MMS21 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MMS21 PE=1 ...
0.0 [1..267] [1..267]
NSE2_SCHPO - E3 SUMO-protein ligase nse2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nse2 PE=1 SV=2
nse2 - Smc5-6 complex non-SMC subunit 2
0.002 [169..249] [181..259]

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Predicted Domain #1
Region A:
Residues: [1-166]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALNDNPIPK SVPLHPKSGK YFHNLHARDL SNIYQQCYKQ IDETINQLVD STSPSTIGIE  60
   61 EQVADITSTY KLLSTYESES NSFDEHIKDL KKNFKQSSDA CPQIDLSTWD KYRTGELTAP 120
  121 KLSELYLNMP TPEPATMVNN TDTLKILKVL PYIWNDPTCV IPDLQN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.351 a.118.8 TPR-like
View Download 0.578 a.24.9 alpha-catenin/vinculin
View Download 0.259 a.29.3 Acyl-CoA dehydrogenase C-terminal domain-like
View Download 0.270 a.25.1 Ferritin-like
View Download 0.336 f.13.1 Family A G protein-coupled receptor-like
View Download 0.256 f.1.3 delta-Endotoxin (insectocide), N-terminal domain
View Download 0.229 a.29.3 Acyl-CoA dehydrogenase C-terminal domain-like
View Download 0.207 d.58.26 GHMP Kinase, C-terminal domain

Predicted Domain #2
Region A:
Residues: [167-267]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PADEDDLQIE GGKIELTCPI TCKPYEAPLI SRKCNHVFDR DGIQNYLQGY TTRDCPQAAC  60
   61 SQVVSMRDFV RDPIMELRCK IAKMKESQEQ DKRSSQAIDV L

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 3.065502
Match: PF02891
Description: MIZ zinc finger

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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