YRC Public Data Repository - Protein Structure Prediction

Protein:	QCR7
Organism:	Saccharomyces cerevisiae
Length:	127 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for QCR7.

Description	E-value	Query Range	Subject Range
gi\|3601 - gi\|3601\|emb\|CAA25064.1\| unnamed protein product [Saccharomyces cerevisiae]	4.0E-51	[1..127]	[1..127]
UCR7_KLULA, QCR7... - Ubiquinol-cytochrome c reductase complex 14 kDa protein - Kluyveromyces lactis (Yeast) (Candida spha... QCR7_KLULA - Cytochrome b-c1 complex subunit 7 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 /...	5.0E-50	[1..127]	[1..127]
QCR7_SCHPO - Cytochrome b-c1 complex subunit 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=qcr7 PE=... qcr7 - ubiquinol-cytochrome-c reductase complex subunit 6	3.0E-41	[9..127]	[4..122]
QCR7_CYBJA - Cytochrome b-c1 complex subunit 7 OS=Cyberlindnera jadinii GN=QCR7 PE=3 SV=1	1.0E-37	[4..127]	[3..126]
gi\|3659967, gi\|5... - gi\|5822457\|pdb\|2BCC\|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken, gi\|3660376\|pd...	4.0E-36	[28..122]	[16..109]
gi\|1351356 - gi\|1351356\|sp\|P00129\|UCR6_BOVIN Ubiquinol-cytochrome c reductase complex 14 kDa protein (Complex III...	9.0E-35	[28..120]	[17..108]
gi\|190804 - gi\|190804\|gb\|AAA60236.1\| ubiquinone-binding protein [Homo sapiens]	9.0E-35	[28..120]	[17..108]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-34	[28..120]	[16..107]

Back

Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQSFTSIAR IGDYILKSPV LSKLCVPVAN QFINLAGYKK LGLKFDDLIA EENPIMQTAL  60
   61 RRLPEDESYA RAYRIIRAHQ TELTHHLLPR NEWIKAQEDV PYLLPYILEA EAAAKEKDEL 120
  121 DNIEVSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	687.68867
Match:	1kyoG_
Description:	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ubiquinol-cytochrome-c reductase activity	11.5736971809848	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor	11.5736971809848	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors	8.17739656377432	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	5.63908133042525	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	5.48702641896397	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	4.88973324048899	bayes_pls_golite062009
oxidoreductase activity	4.83598965448391	bayes_pls_golite062009
cation transmembrane transporter activity	4.64530477348772	bayes_pls_golite062009
ion transmembrane transporter activity	4.44988249046834	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	4.04580005556932	bayes_pls_golite062009
substrate-specific transporter activity	3.85284374888084	bayes_pls_golite062009
binding	1.33677693666883	bayes_pls_golite062009
protein binding	0.634460610267232	bayes_pls_golite062009
catalytic activity	0.385153095337306	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: