| Protein: | SLF1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 447 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLF1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..447] | [1..447] |
|
|
7.0E-63 | [29..360] | [118..488] |
|
|
3.0E-57 | [32..447] | [22..433] |
|
|
1.0E-51 | [22..446] | [29..449] |
|
|
2.0E-51 | [2..383] | [52..416] |
|
|
2.0E-49 | [263..444] | [5..198] |
|
|
8.0E-48 | [263..444] | [5..198] |
|
Region A: Residues: [1-257] |
1 11 21 31 41 51
| | | | | |
1 MSSQNLNDNP KNTSSAAEDK KKQTSSLKLA PIPTTSPWKS SSPDSNTVIP VEELRDISKT 60
61 AKPSKNGSGS IKLTSNTKWT PITPSVIISG SKDTNSKSGK NSKNSKTNKK MKKRGKYNND 120
121 INKKDFNGQT NSTSEISNVS NLESKPLDAN AKVNIHSSSG ATANGNIKRI TNNNNSTNGR 180
181 QSRNYQNRNG KTRYNNNSRH SQAANNAISF PNNYQARPEY IPNASHWLNN NSRNSYKQLS 240
241 YFRQQQYYNN INYQQQL
|
| Detection Method: |  |
| Confidence: | 14.16 |
| Match: | 1i3qA |
| Description: | RBP1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [258-363] |
1 11 21 31 41 51
| | | | | |
1 QTPYYYSMEP IFKSIESIKN QIEFYFSEEN LKTDEFLRSK FKKANDGFIP MSLIGKFYRM 60
61 VNLSLGGDPN LILASMREVL QHKETNHLEI ALGSIEGAQK NMADDF
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.369 | 0.081 | polysome | a.118.8 | TPR-like |
| View | Download | 0.343 | 0.048 | polysome | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.284 | 0.031 | polysome | a.11.2 | Second domain of FERM |
| View | Download | 0.400 | 0.019 | polysome | a.28.2 | Colicin E immunity proteins |
| View | Download | 0.368 | 0.017 | polysome | a.75.1 | Ribosomal protein S7 |
| View | Download | 0.230 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.230 | N/A | N/A | d.94.1 | HPr-like |
| View | Download | 0.215 | N/A | N/A | d.93.1 | SH2 domain |
| View | Download | 0.209 | N/A | N/A | d.2.1 | Lysozyme-like |
| View | Download | 0.207 | N/A | N/A | a.64.1 | Saposin |
| Term | Confidence | Notes |
| mRNA binding | 4.52007814408702 | bayes_pls_golite062009 |
| RNA binding | 4.50438526063124 | bayes_pls_golite062009 |
| nucleic acid binding | 3.64594243387558 | bayes_pls_golite062009 |
| binding | 3.00411894202318 | bayes_pls_golite062009 |
| structural constituent of ribosome | 2.95301685898669 | bayes_pls_golite062009 |
| structural molecule activity | 2.78501986457503 | bayes_pls_golite062009 |
| 1.49431666307335 | bayes_pls_golite062009 | |
| poly(U) RNA binding | 1.35467931535417 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.90573796517364 | bayes_pls_golite062009 |
| transcription regulator activity | 0.737458867828906 | bayes_pls_golite062009 |
| DNA binding | 0.691258294213766 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.599389001184667 | bayes_pls_golite062009 |
| translation regulator activity | 0.38120065819101 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.32812362201346 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.128616879457381 | bayes_pls_golite062009 |
|
Region A: Residues: [364-447] |
1 11 21 31 41 51
| | | | | |
1 NPLENYFIRR ENWAEYAMES NFDENDDETE KYNIEKLLGP NDLDNYSYMG YPNFFPSNEN 60
61 GKKSQSYDQG EISRQFEQNL QIND
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.366 | 0.042 | polysome | a.64.1 | Saposin |
| View | Download | 0.257 | 0.029 | polysome | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.281 | 0.016 | polysome | a.4.3 | ARID-like |
| View | Download | 0.243 | 0.014 | polysome | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.455 | 0.009 | polysome | a.68.1 | Wiscott-Aldrich syndrome protein, WASP, C-terminal domain |
| View | Download | 0.235 | N/A | N/A | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.226 | N/A | N/A | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.222 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.214 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.211 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.202 | N/A | N/A | a.28.2 | Colicin E immunity proteins |
