| Protein: | PSP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 841 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..841] | [1..840] |
|
|
8.0E-58 | [536..765] | [537..744] |
|
|
1.0E-51 | [508..765] | [42..230] |
|
|
7.0E-51 | [510..765] | [525..729] |
|
|
2.0E-39 | [580..765] | [15..169] |
|
|
2.0E-37 | [616..765] | [27..146] |
|
|
3.0E-37 | [615..765] | [26..146] |
|
Region A: Residues: [1-178] |
1 11 21 31 41 51
| | | | | |
1 MDLPTVNSTT SISDNVDLKN YYEDLLFKNN SGKSLSDLPR KLNDNSNNSG SDTVDPLAGL 60
61 NNLRNSIKSA GNGMENRRTF DDIDFMGRFP YLPPVPNQQQ QPFSHQNGFI QEHPSSNLTS 120
121 FQMSSSNSEP MSAPPISSNN NNLNSTQMGN YQAQQRSFPQ FNGNSFHSNG NDLMGNRM
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [179-248] |
1 11 21 31 41 51
| | | | | |
1 DSDYMRLMNK TNIGFTSNSG SNFAAPSHSA GNPSSMNNQQ VPSFNWQQPS HPESTIRRSS 60
61 YISDTLINHQ
|
|
Region B: Residues: [353-387] |
1 11 21 31 41 51
| | | | | |
1 QPQQPQQPRN VNVPTSFNGE RVDDVQLVQL QRSSS
|
|
Region C: Residues: [419-491] |
1 11 21 31 41 51
| | | | | |
1 KHLTSSKTLH DLYSDCGSGY FASSAVFEFT DNIKKMLKLH DSNESYDAKN MGLIDEEGNT 60
61 YQSLLNFLDI LRS
|
|
Region D: Residues: [528-559] |
1 11 21 31 41 51
| | | | | |
1 RNANNSFLPY TPLVLVALKN GKLELLSTPQ AT
|
| Detection Method: | |
| Confidence: | 7.13 |
| Match: | 1ruxA |
| Description: | Adenovirus hexon |
|
Region A: Residues: [249-352] |
1 11 21 31 41 51
| | | | | |
1 MPDARQKQTS QVQQQHAQGF NLFNSRFNYD NLNSTHLTAK GVPEFGNGVQ PPYPYDNEPN 60
61 NASISNSNNN NNSHNMVPMQ QFRRNTQPVA SFNPSLPTFQ QQQQ
|
|
Region B: Residues: [388-418] |
1 11 21 31 41 51
| | | | | |
1 VPSSTNSHNL QNENSNEGNV SLDNGLVLIQ G
|
|
Region C: Residues: [492-527] |
1 11 21 31 41 51
| | | | | |
1 CNMNYVNDPE SNNGIVSNNG GNKNRRKGSF TTELSC
|
|
Region D: Residues: [560-614] |
1 11 21 31 41 51
| | | | | |
1 NLLLKRGDLV IIDGDRGRDL VLVVEPSVDL NLALFINFLK KKIHFDSLIT SESQH
|
| Detection Method: | |
| Confidence: | 7.13 |
| Match: | 1ruxA |
| Description: | Adenovirus hexon |
|
Region A: Residues: [615-841] |
1 11 21 31 41 51
| | | | | |
1 YRNDEFIQML IDSKNGQKKK LNPKLYDVVE LTELIIPSKQ VLRFATPWEV TTNLHNKFED 60
61 ELKALHIAQS KLQALNDNSK SQNTNDSSSN NFTNAATYSK PKLNIKILNA EFQFDRKELT 120
121 FYYVCEERND FRDLIKELFK YYKTRIWLCA IPNNLSIDSK YYDKQQKELK LYQNIVKNYN 180
181 AEDLMNVNEF SQNRGNNRVN FAPPLNEIEL DNFQIAVYEE LVHELFH
|
| Detection Method: | |
| Confidence: | 7.88 |
| Match: | 1iw7D |
| Description: | RNA-polymerase beta-prime |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [630-841] |
1 11 21 31 41 51
| | | | | |
1 GQKKKLNPKL YDVVELTELI IPSKQVLRFA TPWEVTTNLH NKFEDELKAL HIAQSKLQAL 60
61 NDNSKSQNTN DSSSNNFTNA ATYSKPKLNI KILNAEFQFD RKELTFYYVC EERNDFRDLI 120
121 KELFKYYKTR IWLCAIPNNL SIDSKYYDKQ QKELKLYQNI VKNYNAEDLM NVNEFSQNRG 180
181 NNRVNFAPPL NEIELDNFQI AVYEELVHEL FH
|
| Detection Method: | |
| Confidence: | 16.568636 |
| Match: | PF04468.3 |
| Description: | No description for PF04468.3 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
