YRC Public Data Repository - Protein Structure Prediction

Protein:	SEC20
Organism:	Saccharomyces cerevisiae
Length:	383 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEC20.

Description	E-value	Query Range	Subject Range
SEC20_YEAST - Protein transport protein SEC20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC20 PE... SEC20 - Membrane glycoprotein v-SNARE involved in retrograde transport from the Golgi to the ER; required fo...	0.0	[1..383]	[1..383]
gi\|7159589 - gi\|7159589\|emb\|CAB76200.1\| Sec20p [Candida albicans] gi\|68473533, gi\|... - gi\|68473533\|ref\|XP_719091.1\| hypothetical protein CaO19.5526 [Candida albicans SC5314], gi\|46440892\|...	2.0E-71	[105..371]	[41..305]
sec20 - SNARE Sec20 SEC20_SCHPO - Protein transport protein sec20 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec20 PE=1...	8.0E-62	[96..307]	[10..225]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	3.0E-55	[69..295]	[244..458]
gi\|11994693 - gi\|11994693\|dbj\|BAB02931.1\| unnamed protein product [Arabidopsis thaliana]	3.0E-47	[58..295]	[37..274]
gi\|4502441, gi\|5... - gi\|558842\|gb\|AAC00020.1\| BCL2/adenovirus E1B 19kD-interacting protein 1 [Homo sapiens], gi\|4502441\|r...	2.0E-43	[105..296]	[49..225]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVTFLQDLE VLQDALLNNL QKLSAISRRK ESGESKHDNK DSFAAIANEH NDEEEEIEFE  60
   61 DLVNIIESKV SDFESVLKCS IVEMTYKYPE LKLQWEKSPR YDQCDKLHIV KLDKQMNEDI 120
  121 YAQLVEELDF VLQFVDWFYC YRLKVKEILR QHHKRDLAWN DEKRDRAIKF HAVDYDKLHQ 180
  181 GTSSSS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [187-319]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLTSTSMEKA STREKLLSKT KQLTNNLVRG NQILQSGILQ SDLNLDELRA QTNSLTQIDD  60
   61 KYTQFETVFK KTADLVKVLE NASHQEKRDV YLSLGFLLCC VSWVLWRRIF KLPVKLGLWL 120
  121 LFKFFKGILV TLG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	50.187087
Match:	PF03908
Description:	Sec20

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [320-383]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVKSYAGSSS SLQAPSLVLN APILATTTTS SATSVEPFAS VSAVSSIQRA VDEAVDRIVS  60
   61 HDEL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits