| Protein: | SEC20 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 383 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEC20.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..383] | [1..383] |
|
|
2.0E-71 | [105..371] | [41..305] |
|
|
8.0E-62 | [96..307] | [10..225] |
|
|
3.0E-55 | [69..295] | [244..458] |
|
|
3.0E-47 | [58..295] | [37..274] |
|
|
2.0E-43 | [105..296] | [49..225] |
|
Region A: Residues: [1-186] |
1 11 21 31 41 51
| | | | | |
1 MVVTFLQDLE VLQDALLNNL QKLSAISRRK ESGESKHDNK DSFAAIANEH NDEEEEIEFE 60
61 DLVNIIESKV SDFESVLKCS IVEMTYKYPE LKLQWEKSPR YDQCDKLHIV KLDKQMNEDI 120
121 YAQLVEELDF VLQFVDWFYC YRLKVKEILR QHHKRDLAWN DEKRDRAIKF HAVDYDKLHQ 180
181 GTSSSS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.292 | a.118.7 | 14-3-3 protein |
| View | Download | 0.292 | a.118.7 | 14-3-3 protein |
|
Region A: Residues: [187-319] |
1 11 21 31 41 51
| | | | | |
1 SLTSTSMEKA STREKLLSKT KQLTNNLVRG NQILQSGILQ SDLNLDELRA QTNSLTQIDD 60
61 KYTQFETVFK KTADLVKVLE NASHQEKRDV YLSLGFLLCC VSWVLWRRIF KLPVKLGLWL 120
121 LFKFFKGILV TLG
|
| Detection Method: | |
| Confidence: | 50.187087 |
| Match: | PF03908 |
| Description: | Sec20 |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [320-383] |
1 11 21 31 41 51
| | | | | |
1 LVKSYAGSSS SLQAPSLVLN APILATTTTS SATSVEPFAS VSAVSSIQRA VDEAVDRIVS 60
61 HDEL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.461 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.692 | a.50.1 | Anaphylotoxins (complement system) |
| View | Download | 0.431 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.692 | a.50.1 | Anaphylotoxins (complement system) |
| View | Download | 0.461 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.452 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.452 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.445 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.445 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.431 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.430 | a.2.7 | tRNA-binding arm |
| View | Download | 0.429 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.415 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.413 | a.2.9 | C-terminal UvrC-binding domain of UvrB |
| View | Download | 0.398 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.385 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.361 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.353 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.347 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.344 | d.57.1 | DNA damage-inducible protein DinI |
| View | Download | 0.341 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.337 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.325 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.324 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.317 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.317 | a.101.1 | Uteroglobin-like |
| View | Download | 0.315 | a.4.1 | Homeodomain-like |
| View | Download | 0.314 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.314 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.313 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.312 | a.2.3 | Chaperone J-domain |
| View | Download | 0.306 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.303 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.295 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.292 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.286 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.285 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.272 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.263 | a.2.1 | GreA transcript cleavage protein, N-terminal domain |
| View | Download | 0.262 | a.30.1 | ROP protein |
| View | Download | 0.259 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.256 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.256 | a.50.1 | Anaphylotoxins (complement system) |
| View | Download | 0.252 | a.4.13 | Sigma3 and sigma4 domains of RNA polymerase sigma factors |
| View | Download | 0.251 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.248 | a.3.1 | Cytochrome c |
| View | Download | 0.245 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.240 | d.48.1 | RecA protein, C-terminal domain |
| View | Download | 0.237 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.231 | i.1.1 | Ribosome and ribosomal fragments |
| View | Download | 0.231 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.223 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.223 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.221 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.219 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.216 | d.48.1 | RecA protein, C-terminal domain |
| View | Download | 0.215 | a.2.3 | Chaperone J-domain |
| View | Download | 0.214 | a.4.1 | Homeodomain-like |
| View | Download | 0.212 | g.57.1 | Serine proteinase inhibitor lekti |
| View | Download | 0.211 | a.4.1 | Homeodomain-like |
| View | Download | 0.210 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.210 | a.2.7 | tRNA-binding arm |
| View | Download | 0.208 | a.3.1 | Cytochrome c |
| View | Download | 0.201 | a.153.1 | Nuclear receptor coactivator interlocking domain |
| View | Download | 0.201 | d.10.1 | DNA-binding domain |
| View | Download | 0.201 | f.17.1 | F1F0 ATP synthase subunit C |
