Protein: | PKH1 |
Organism: | Saccharomyces cerevisiae |
Length: | 766 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PKH1.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..766] | [1..766] |
|
0.0 | [16..647] | [2..585] |
|
0.0 | [16..647] | [2..585] |
|
0.0 | [38..648] | [10..574] |
|
0.0 | [5..471] | [114..547] |
|
0.0 | [50..648] | [20..569] |
|
0.0 | [50..648] | [20..569] |
|
0.0 | [50..648] | [20..569] |
Region A: Residues: [1-72] |
1 11 21 31 41 51 | | | | | | 1 MGNRSLTEAD HALLSKPLVP TSAEHTQTQE YPRPFVDGSN SQSGSELQAS PQGQFGEKAL 60 61 TSTNRFIPLA ND |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.241 | a.42.1 | MDM2 |
View | Download | 0.238 | a.150.1 | Anti-sigma factor AsiA |
View | Download | 0.325 | a.64.2 | Bacteriocin AS-48 |
Region A: Residues: [73-174] |
1 11 21 31 41 51 | | | | | | 1 DPGMQHEMGL DPSMRRRREE WAERGAAKIV KDVVDPATGE LTKHVVKMGI KDFKFGEQLG 60 61 DGSYSSVVLA TARDSGKKYA VKVLSKEYLI RQKKVKYVTV EK |
Region B: Residues: [189-205] |
1 11 21 31 41 51 | | | | | | 1 LFFTFQDEAS LYFLLEY |
Region C: Residues: [412-483] |
1 11 21 31 41 51 | | | | | | 1 YKINAEAMKP LQKVSESDTT VKMANLQLAG NGHADTPLQA PAATSQEHSV ISMTAATAAF 60 61 NKDYTSQPKL GS |
Detection Method: | |
Confidence: | 571.9794 |
Match: | 1fotA_ |
Description: | cAMP-dependent PK, catalytic subunit |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [175-188] |
1 11 21 31 41 51 | | | | | | 1 LALQKLNGTK GIFK |
Region B: Residues: [206-411] |
1 11 21 31 41 51 | | | | | | 1 APHGDFLGLI KKYGSLNETC ARYYASQIID AVDSLHNIGI IHRDIKPENI LLDKNMKVKL 60 61 TDFGTAKILP EEPSNTADGK PYFDLYAKSK SFVGTAEYVS PELLNDNYTD SRCDIWAFGC 120 121 ILYQMLAGKP PFKAANEYLT FQKVMKIQYA FTAGFPQIVK DLVKKLLVRD PNDRLTIKQI 180 181 KAHLFFHEVN FEDGSVWDDN PPEIQP |
Detection Method: | |
Confidence: | 571.9794 |
Match: | 1fotA_ |
Description: | cAMP-dependent PK, catalytic subunit |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [484-696] |
1 11 21 31 41 51 | | | | | | 1 KSSTSVRSAS NNTDREVIQK KVSKNRASVS SPSISTTSRG KDNRSRSSDA FWSRYLQNMD 60 61 ERVLLMKEVA LSTRNLEDSP VGLENVALDY KNPLDIEPPT DSAGKFYKKM FLITNLGRAL 120 121 VFVKRRSLSM WEEQEFELQF ELELNDVEKI RFISDQVLEI DGSRTIFIGC KERAVLMKLW 180 181 KLIHNGMTAK PKVVSPKSDH KMFDKFILQK RQN |
Detection Method: | |
Confidence: | 4.0 |
Match: | 1i84S_ |
Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [697-766] |
1 11 21 31 41 51 | | | | | | 1 TKKKNQAPPV PQSNRLINGL PDRCILKTPE EGALHTKRPT SLQTRSSSNY SKLLARSTQM 60 61 RKNMTRTDEK |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.329 | a.4.1 | Homeodomain-like |
View | Download | 0.282 | d.58.1 | 4Fe-4S ferredoxins |
View | Download | 0.253 | a.35.1 | lambda repressor-like DNA-binding domains |
View | Download | 0.437 | a.36.1 | Signal peptide-binding domain |
View | Download | 0.304 | a.60.8 | HRDC-like |
View | Download | 0.236 | a.77.1 | DEATH domain |
View | Download | 0.225 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
View | Download | 0.206 | a.6.1 | Putative DNA-binding domain |
View | Download | 0.206 | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
View | Download | 0.203 | a.30.1 | ROP protein |