| Protein: | PKH1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 766 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PKH1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..766] | [1..766] |
|
|
0.0 | [16..647] | [2..585] |
|
|
0.0 | [16..647] | [2..585] |
|
|
0.0 | [38..648] | [10..574] |
|
|
0.0 | [5..471] | [114..547] |
|
|
0.0 | [50..648] | [20..569] |
|
|
0.0 | [50..648] | [20..569] |
|
|
0.0 | [50..648] | [20..569] |
|
Region A: Residues: [1-72] |
1 11 21 31 41 51
| | | | | |
1 MGNRSLTEAD HALLSKPLVP TSAEHTQTQE YPRPFVDGSN SQSGSELQAS PQGQFGEKAL 60
61 TSTNRFIPLA ND
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.241 | a.42.1 | MDM2 |
| View | Download | 0.238 | a.150.1 | Anti-sigma factor AsiA |
| View | Download | 0.325 | a.64.2 | Bacteriocin AS-48 |
|
Region A: Residues: [73-174] |
1 11 21 31 41 51
| | | | | |
1 DPGMQHEMGL DPSMRRRREE WAERGAAKIV KDVVDPATGE LTKHVVKMGI KDFKFGEQLG 60
61 DGSYSSVVLA TARDSGKKYA VKVLSKEYLI RQKKVKYVTV EK
|
|
Region B: Residues: [189-205] |
1 11 21 31 41 51
| | | | | |
1 LFFTFQDEAS LYFLLEY
|
|
Region C: Residues: [412-483] |
1 11 21 31 41 51
| | | | | |
1 YKINAEAMKP LQKVSESDTT VKMANLQLAG NGHADTPLQA PAATSQEHSV ISMTAATAAF 60
61 NKDYTSQPKL GS
|
| Detection Method: | |
| Confidence: | 571.9794 |
| Match: | 1fotA_ |
| Description: | cAMP-dependent PK, catalytic subunit |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [175-188] |
1 11 21 31 41 51
| | | | | |
1 LALQKLNGTK GIFK
|
|
Region B: Residues: [206-411] |
1 11 21 31 41 51
| | | | | |
1 APHGDFLGLI KKYGSLNETC ARYYASQIID AVDSLHNIGI IHRDIKPENI LLDKNMKVKL 60
61 TDFGTAKILP EEPSNTADGK PYFDLYAKSK SFVGTAEYVS PELLNDNYTD SRCDIWAFGC 120
121 ILYQMLAGKP PFKAANEYLT FQKVMKIQYA FTAGFPQIVK DLVKKLLVRD PNDRLTIKQI 180
181 KAHLFFHEVN FEDGSVWDDN PPEIQP
|
| Detection Method: | |
| Confidence: | 571.9794 |
| Match: | 1fotA_ |
| Description: | cAMP-dependent PK, catalytic subunit |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [484-696] |
1 11 21 31 41 51
| | | | | |
1 KSSTSVRSAS NNTDREVIQK KVSKNRASVS SPSISTTSRG KDNRSRSSDA FWSRYLQNMD 60
61 ERVLLMKEVA LSTRNLEDSP VGLENVALDY KNPLDIEPPT DSAGKFYKKM FLITNLGRAL 120
121 VFVKRRSLSM WEEQEFELQF ELELNDVEKI RFISDQVLEI DGSRTIFIGC KERAVLMKLW 180
181 KLIHNGMTAK PKVVSPKSDH KMFDKFILQK RQN
|
| Detection Method: | |
| Confidence: | 4.0 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [697-766] |
1 11 21 31 41 51
| | | | | |
1 TKKKNQAPPV PQSNRLINGL PDRCILKTPE EGALHTKRPT SLQTRSSSNY SKLLARSTQM 60
61 RKNMTRTDEK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.329 | a.4.1 | Homeodomain-like |
| View | Download | 0.282 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.253 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.437 | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.304 | a.60.8 | HRDC-like |
| View | Download | 0.236 | a.77.1 | DEATH domain |
| View | Download | 0.225 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.206 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.206 | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
| View | Download | 0.203 | a.30.1 | ROP protein |
