YRC Public Data Repository - Protein Structure Prediction

Protein:	PEX29
Organism:	Saccharomyces cerevisiae
Length:	554 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PEX29.

Description	E-value	Query Range	Subject Range
gi\|49529045, gi\|... - gi\|50294640\|ref\|XP_449731.1\| hypothetical protein CAGL0M08866g [Candida glabrata CBS138], gi\|4952904... gi\|49529045 - gi\|49529045\|emb\|CAG62707.1\| unnamed protein product [Candida glabrata]	564.0	[0..1]	[530..1]
PEX28 - Peroxisomal integral membrane peroxin, involved in the regulation of peroxisomal size, number and di... PEX28_YEAST - Peroxisomal membrane protein PEX28 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PEX28...	551.0	[0..71]	[429..152]
gi\|49640447 - gi\|49640447\|emb\|CAH02904.1\| KLLA0A07128p [Kluyveromyces lactis] gi\|49640447, gi\|... - gi\|50302759\|ref\|XP_451316.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640447\|emb\|CAH0290...	430.0	[0..71]	[552..16]
gi\|44983276 - gi\|44983276\|gb\|AAS52458.1\| AEL227Cp [Ashbya gossypii ATCC 10895] gi\|45190380, gi\|... - gi\|45190380\|ref\|NP_984634.1\| AEL227Cp [Ashbya gossypii ATCC 10895], gi\|44983276\|gb\|AAS52458.1\| AEL22...	403.0	[0..51]	[510..2]
gi\|49655635, gi\|... - gi\|50422781\|ref\|XP_459967.1\| hypothetical protein DEHA0E15785g [Debaryomyces hansenii CBS767], gi\|49...	264.0	[0..1]	[470..1]
gi\|42545479, gi\|... - gi\|46137161\|ref\|XP_390272.1\| hypothetical protein FG10096.1 [Gibberella zeae PH-1], gi\|42545479\|gb\|E...	214.0	[0..34]	[449..26]
gi\|90305152, gi\|... - gi\|90305152\|gb\|EAS34783.1\| hypothetical protein CIMG_00137 [Coccidioides immitis RS], gi\|119191520\|r...	210.0	[0..44]	[449..18]

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Predicted Domain #1

Region A:
Residues: [1-496]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSVTNFFWN DTYNAGTPTR STLKGKKVQN GIDGKSQAKK ESISSGSRTS DPTRGSLPSS  60
   61 SGQPTSGGGF PSTSNIQKMM ADTLVEKIIK MALPPSSKTA VDTIHHRMVA GKERPKLSVQ 120
  121 ITSRNFIQMN SRLGVPFMIM DELIKILNWT NPAYTVSIMF LYTLIILKPF QMLSSLPIFY 180
  181 LLFCVMVPQY LYIHKPNPTS YLDNNQTPAQ GPPLRRPEVP KPVPELSQEF VLNLTDLQNH 240
  241 MLLYVKFYDF TLLILQKFAF FTNEAISSFY FIVLLIIATL NFLYMDKFIK LIPMRPVLIL 300
  301 LGWGFFIASH PSNREYLLTK LNSEETRLKT LTISTNLESK ILQHLKLIEA REHRLVMIFE 360
  361 IQKYLPEYKE WRPVGFSDDD YSLFSSLRIY QRRIEENSVK SLEEIEPPKD WEWEANSHWV 420
  421 LDLDPKEWVE DEFIQYVEID SETKWVYDLN LDGQRGSYRR RMWTNSCVRK KLDSGISSNL 480
  481 GEEEVVNPLR EETYRQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [497-554]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVHGVTKGSM SGGLTHSSDD DRADEESING TIPNLNNIDA DASYPSIEEL TDTLNSTI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits