YRC Public Data Repository - Protein Structure Prediction

Protein:	YDR476C
Organism:	Saccharomyces cerevisiae
Length:	224 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR476C.

Description	E-value	Query Range	Subject Range
YD476_YEAST - Uncharacterized protein YDR476C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDR476C ... YDR476C - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th... gi\|151942439 - gi\|151942439\|gb\|EDN60795.1\| conserved protein [Saccharomyces cerevisiae YJM789] gi\|207346235 - gi\|207346235\|gb\|EDZ72791.1\| YDR476Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190404602 - gi\|190404602\|gb\|EDV07869.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]	0.0	[1..224]	[1..224]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWDSLIVSIN DTHKLGLEDC LAVFGHVPIT KAVKHVRLTE IDTQTSTFTL KFLHTETGQN  60
   61 IEKIIYFIDN DTGNDTRTAT GIKQIFNKMF RIAAEKRKLS LIQIDTVEYP CTLVDLLILV 120
  121 GVALPPLCYL YRPALHAIFF LVPNPVGSTL EAWLDSDLVL RLIIVAEFLT HALETLIFVV 180
  181 PRLKYYRVPG EFVPEWLLLG LLEGYGPARR LDTKARTLGE GSVN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [144-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPVGSTLEAW LDSDLVLRLI IVAEFLTHAL ETLIFVVPRL KYYRVPGEFV PEWLLLGLLE  60
   61 GYGPARRLDT KARTLGEGSV N