YRC Public Data Repository - Protein Structure Prediction

Protein:	YDR476C
Organism:	Saccharomyces cerevisiae
Length:	224 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR476C.

Description	E-value	Query Range	Subject Range
YD476_YEAST - Uncharacterized protein YDR476C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDR476C ... YDR476C - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th... gi\|151942439 - gi\|151942439\|gb\|EDN60795.1\| conserved protein [Saccharomyces cerevisiae YJM789] gi\|207346235 - gi\|207346235\|gb\|EDZ72791.1\| YDR476Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190404602 - gi\|190404602\|gb\|EDV07869.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]	0.0	[1..224]	[1..224]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWDSLIVSIN DTHKLGLEDC LAVFGHVPIT KAVKHVRLTE IDTQTSTFTL KFLHTETGQN  60
   61 IEKIIYFIDN DTGNDTRTAT GIKQIFNKMF RIAAEKRKLS LIQIDTVEYP CTLVDLLILV 120
  121 GVALPPLCYL YRPALHAIFF LVPNPVGSTL EAWLDSDLVL RLIIVAEFLT HALETLIFVV 180
  181 PRLKYYRVPG EFVPEWLLLG LLEGYGPARR LDTKARTLGE GSVN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [144-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPVGSTLEAW LDSDLVLRLI IVAEFLTHAL ETLIFVVPRL KYYRVPGEFV PEWLLLGLLE  60
   61 GYGPARRLDT KARTLGEGSV N