YRC Public Data Repository - Protein Structure Prediction

Protein:	TRS31
Organism:	Saccharomyces cerevisiae
Length:	283 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRS31.

Description	E-value	Query Range	Subject Range
TRS31_YEAST - Trafficking protein particle complex subunit 31 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2... TRS31 - One of 10 subunits of the transport protein particle (TRAPP) complex of the cis-Golgi which mediates...	0.0	[1..283]	[1..283]
TRS31_SCHPO - Transport protein particle subunit trs31 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=t... trs31 - TRAPP complex subunit Trs31	3.0E-67	[104..278]	[9..205]
gi\|4959712 - gi\|4959712\|gb\|AAD34459.1\|AF136010_1 SPP30 [Solanum chacoense]	5.0E-65	[43..279]	[11..191]
gi\|21555061, gi\|... - gi\|9759528\|dbj\|BAB10994.1\| unnamed protein product [Arabidopsis thaliana], gi\|28466921\|gb\|AAO44069.1...	2.0E-64	[43..279]	[11..191]
CE22619 - status:Partially_confirmed UniProt:Q9NA81 protein_id:CAB55019.1	2.0E-42	[166..278]	[67..177]
TPPC5_PLAF7 - Trafficking protein particle complex subunit 5 OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0358 P... TPPC5_PLAFA - Trafficking protein particle complex subunit 5 OS=Plasmodium falciparum PE=3 SV=1	7.0E-42	[162..278]	[60..181]
gi\|18375945 - gi\|18375945\|emb\|CAD21244.1\| related to SPP30 protein [Neurospora crassa]	2.0E-39	[121..280]	[29..239]
TRS31_ENCCU - Putative trafficking protein particle complex subunit TRS31 OS=Encephalitozoon cuniculi (strain GB-M... TRS31_ENCCU - Putative trafficking protein particle complex subunit TRS31 OS=Encephalitozoon cuniculi GN=TRS31 PE=...	0.001	[54..136]	[2..84]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQRIIQPSA SDQQFPGKSD GYEYTVGPKQ AITSEASTTY IPSRIYSESL LFKRQEASLS  60
   61 AMAFLFQEMI SQLHRTCKTA GDFETKLSDY GHNIGIRLLE LLNFRASVSP SSLPRASAFL 120
  121 SQNESSSKLS NASNSPGMLA NSSTATSA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
Rab guanyl-nucleotide exchange factor activity	5.6079912636527	bayes_pls_golite062009
binding	1.61860097455426	bayes_pls_golite062009
protein binding	0.704339182896017	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [149-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SANERLQEKQ TESLSNYITK MRRRDLKILD ILQFIHGTLW SYLFNHVSDD LVKSSERDNE  60
   61 YMIVDNFPTL TQFIPGENVS CEYFVCGIIK GFLFNAGFPC GVTAHRMPQG GHSQRTVYLI 120
  121 QFDRQVLDRE GLRFG