YRC Public Data Repository - Protein Structure Prediction

Protein:	RMT2
Organism:	Saccharomyces cerevisiae
Length:	412 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RMT2.

Description	E-value	Query Range	Subject Range
RMT2_YEAST - Protein arginine N-methyltransferase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=R... RMT2 - Arginine methyltransferase; ribosomal protein L12 is a substrate	0.0	[1..412]	[1..412]
RMT2_SCHPO - Protein arginine N-methyltransferase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rmt... SPAC26A3.17c - N-methyltransferase	3.0E-48	[84..411]	[64..355]
gi\|218193796 - gi\|218193796\|gb\|EEC76223.1\| hypothetical protein OsI_13629 [Oryza sativa Indica Group] gi\|108711213, gi... - gi\|50918925\|ref\|XP_469859.1\| putative methyltransferase [Oryza sativa (japonica cultivar-group)], gi...	5.0E-48	[94..410]	[61..328]
gi\|11277873 - pir\|\|A81324 cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79) Cj1183c [similarity] - Campy... gi\|15792507, gi\|... - gi\|6968616\|emb\|CAB73437.1\| putative cyclopropane-fatty-acyl-phospholipid synthase [Campylobacter jej...	1.0E-43	[118..386]	[51..312]
gi\|19551807 - gi\|19551807\|ref\|NP_599809.1\| putative cyclopropane-fatty-acyl-phospholipid synthase [Corynebacterium...	5.0E-42	[103..400]	[48..378]
gi\|15894164, gi\|... - gi\|15894164\|ref\|NP_347513.1\| cyclopropane fatty acid synthase [Clostridium acetobutylicum ATCC 824],... gi\|25300077 - pir\|\|B97008 cyclopropane fatty acid synthase [imported] - Clostridium acetobutylicum	2.0E-41	[113..348]	[47..270]
FAMT_PSEPU - Probable fatty acid methyltransferase OS=Pseudomonas putida PE=3 SV=1	4.0E-40	[125..386]	[58..316]
gi\|12324209 - gi\|12324209\|gb\|AAG52075.1\|AC012679_13 putative S-adenosyl-methionine-sterol-C-methyltransferase, 5' ...	6.0E-40	[230..400]	[75..248]
gi\|15600739, gi\|... - gi\|9951886\|gb\|AAG08931.1\|AE004967_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1], gi... gi\|11348354 - pir\|\|C82951 conserved hypothetical protein PA5546 [imported] - Pseudomonas aeruginosa (strain PAO1)	3.0E-39	[108..386]	[39..316]

Back

Predicted Domain #1

Region A:
Residues: [1-67]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELHALLTF PERPISQSYY VPKLQHFLKS GIPATYTLEQ VAAFEHEEKN RNGDKEFRES  60
   61 TDDNKTS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [68-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTTPLHVLAR SLPLDIKDEE LQVVMDMMNI LFEYGAGWNF IDYEDKTVGD LFLERNQSRE  60
   61 SPLYRRLVEA GVSAELLLRK LNGGDVEFLD TDELIGIEPE ESVQTAVDGQ KEESVGSDDD 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.873	0.186	protein-arginine N-methyltransferase activity	c.51.1	Anticodon-binding domain of Class II aaRS

Predicted Domain #3

Region A:
Residues: [188-412]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATAANQQVYL KTELEYKDDA LITKENKDGV MMDWETKIME LASETLFPDP EATNSATILN  60
   61 IGFGMGIIDT FIQARKPYRH YICEAHPDVL AKMKMDGWYE KDNVVILEGR WQDTLNNLLD 120
  121 KGEVFFDGIY YDTFSEHYQD ILDLYDVVVG LIKPEGVFSF FNGLGADRSL CYDVYKEIVE 180
  181 IDVATYGMKC DYTRYSLDEQ LPDWNDVKRS YFNCNYYYHP RITFA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	84.70927
Match:	1khhA_
Description:	Guanidinoacetate methyltransferase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits