| Protein: | RMT2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 412 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RMT2.
| Description | E-value | Query Range |
Subject Range |
|
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0.0 | [1..412] | [1..412] |
|
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3.0E-48 | [84..411] | [64..355] |
|
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5.0E-48 | [94..410] | [61..328] |
|
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1.0E-43 | [118..386] | [51..312] |
|
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5.0E-42 | [103..400] | [48..378] |
|
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2.0E-41 | [113..348] | [47..270] |
|
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4.0E-40 | [125..386] | [58..316] |
|
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6.0E-40 | [230..400] | [75..248] |
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3.0E-39 | [108..386] | [39..316] |
|
Region A: Residues: [1-67] |
1 11 21 31 41 51
| | | | | |
1 MSELHALLTF PERPISQSYY VPKLQHFLKS GIPATYTLEQ VAAFEHEEKN RNGDKEFRES 60
61 TDDNKTS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.377 | a.77.1 | DEATH domain |
| View | Download | 0.463 | a.74.1 | Cyclin-like |
| View | Download | 0.597 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.403 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.597 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.463 | a.74.1 | Cyclin-like |
| View | Download | 0.458 | a.74.1 | Cyclin-like |
| View | Download | 0.403 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.377 | a.77.1 | DEATH domain |
| View | Download | 0.356 | a.5.2 | UBA-like |
| View | Download | 0.356 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.296 | a.39.1 | EF-hand |
| View | Download | 0.294 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.288 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.279 | a.21.1 | HMG-box |
| View | Download | 0.253 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.238 | a.55.1 | IHF-like DNA-binding proteins |
| View | Download | 0.230 | a.43.1 | Met repressor-like |
| View | Download | 0.225 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.222 | a.3.1 | Cytochrome c |
| View | Download | 0.216 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.211 | a.5.2 | UBA-like |
| View | Download | 0.207 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
|
Region A: Residues: [68-187] |
1 11 21 31 41 51
| | | | | |
1 NTTPLHVLAR SLPLDIKDEE LQVVMDMMNI LFEYGAGWNF IDYEDKTVGD LFLERNQSRE 60
61 SPLYRRLVEA GVSAELLLRK LNGGDVEFLD TDELIGIEPE ESVQTAVDGQ KEESVGSDDD 120
121
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.873 | 0.186 | protein-arginine N-methyltransferase activity | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.640 | 0.136 | protein-arginine N-methyltransferase activity | a.74.1 | Cyclin-like |
| View | Download | 0.439 | N/A | N/A | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.299 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.289 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.272 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.251 | N/A | N/A | c.30.1 | PreATP-grasp domain |
| View | Download | 0.250 | N/A | N/A | d.164.1 | SMAD MH1 domain |
| View | Download | 0.224 | N/A | N/A | c.47.1 | Thioredoxin-like |
| View | Download | 0.220 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.202 | N/A | N/A | a.61.1 | Retroviral matrix proteins |
|
Region A: Residues: [188-412] |
1 11 21 31 41 51
| | | | | |
1 ATAANQQVYL KTELEYKDDA LITKENKDGV MMDWETKIME LASETLFPDP EATNSATILN 60
61 IGFGMGIIDT FIQARKPYRH YICEAHPDVL AKMKMDGWYE KDNVVILEGR WQDTLNNLLD 120
121 KGEVFFDGIY YDTFSEHYQD ILDLYDVVVG LIKPEGVFSF FNGLGADRSL CYDVYKEIVE 180
181 IDVATYGMKC DYTRYSLDEQ LPDWNDVKRS YFNCNYYYHP RITFA
|
| Detection Method: | |
| Confidence: | 84.70927 |
| Match: | 1khhA_ |
| Description: | Guanidinoacetate methyltransferase |
Matching Structure (courtesy of the PDB): |
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