| Protein: | STP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 577 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [3..501] | [291..820] |
|
|
0.0 | [3..505] | [323..854] |
|
|
0.0 | [3..490] | [148..650] |
|
Region A: Residues: [1-168] |
1 11 21 31 41 51
| | | | | |
1 MNCITIDVFF TAFSHPCKRK KKQADSCINC KDSLIKSRFT LQTKGKGKLY RLYHIRSKMP 60
61 STTLLFPQKH IRAIPGKIYA FFRELVSGVI ISKPDLSHHY SCENATKEEG KDAADEEKTT 120
121 TSLFPESNNI DRSLNGGCSV IPCSMDVSDL NTPISITLSP ENRIKSEV
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [169-270] |
1 11 21 31 41 51
| | | | | |
1 NAKSLLGSRP EQDTGAPIKM STGVTSSPLS PSGSTPEHST KVLNNGEEEF ICHYCDATFR 60
61 IRGYLTRHIK KHAIEKAYHC PFFNSATPPD LRCHNSGGFS RR
|
| Detection Method: | |
| Confidence: | 28.0 |
| Match: | 1meyG_ |
| Description: | Designed zinc finger protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [271-323] |
1 11 21 31 41 51
| | | | | |
1 DTYKTHLKAR HVLYPKGVKP QDRNKSSGHC AQCGEYFSTI ENFVENHIES GDC
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.519 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.602 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.568 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.447 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.395 | a.4.1 | Homeodomain-like |
| View | Download | 0.385 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.363 | a.4.1 | Homeodomain-like |
| View | Download | 0.346 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.325 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.312 | a.57.1 | Protein HNS-dependent expression A; HdeA |
| View | Download | 0.300 | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.296 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.295 | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
| View | Download | 0.294 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.286 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.274 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.269 | a.5.2 | UBA-like |
| View | Download | 0.260 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.257 | a.3.1 | Cytochrome c |
| View | Download | 0.252 | a.5.2 | UBA-like |
| View | Download | 0.244 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.239 | a.112.1 | Description not found. |
| View | Download | 0.238 | a.4.1 | Homeodomain-like |
| View | Download | 0.222 | a.144.1 | PABC (PABP) domain |
|
Region A: Residues: [324-475] |
1 11 21 31 41 51
| | | | | |
1 KALPQGYTKK NEKRSGKLRK IKTSNGHSRF ISTSQSVVEP KVLFNKDAVE AMTIVANNSS 60
61 GNDIISKYGN NKLMLNSENF KVDIPKRKRK YIKKKQQQVS GSTVTTPEVA TQNNQEVAPD 120
121 EISSATIFSP FDTHLLEPVP SSSSESSAEV MF
|
| Detection Method: | |
| Confidence: | 18.69897 |
| Match: | 1ubdC_ |
| Description: | Ying-yang 1 (yy1, zinc finger domain) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [476-577] |
1 11 21 31 41 51
| | | | | |
1 HGKQMKNFLI DINSFTNQQQ QAQDNPSFLP LDIEQSSYDL SEDAMSYPII STQSNRDCTQ 60
61 YDNTKISQIL QSQLNPEYLS ENHMRETQQY LNFYNDNFGS QF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.269 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.297 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.387 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.512 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.257 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.232 | a.118.9 | ENTH/VHS domain |
| View | Download | 0.228 | a.3.1 | Cytochrome c |
| View | Download | 0.228 | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.227 | a.24.4 | Hemerythrin |
| View | Download | 0.227 | a.3.1 | Cytochrome c |
| View | Download | 0.223 | d.224.1 | SufE-like |
| View | Download | 0.222 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.220 | a.26.1 | 4-helical cytokines |
| View | Download | 0.217 | a.47.2 | t-snare proteins |
| View | Download | 0.215 | a.118.9 | ENTH/VHS domain |
| View | Download | 0.209 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.202 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.201 | d.58.10 | Acylphosphatase-like |
| View | Download | 0.201 | a.39.1 | EF-hand |
