YRC Public Data Repository - Protein Structure Prediction

Protein:	LRS4
Organism:	Saccharomyces cerevisiae
Length:	347 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LRS4.

Description	E-value	Query Range	Subject Range
gi\|190404632 - gi\|190404632\|gb\|EDV07899.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] LRS4 - Nucleolar protein that forms a complex with Csm1p, and then Mam1p at kinetochores during meiosis I t... LRS4_YEAST - Monopolin complex subunit LRS4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LRS4 PE=1... gi\|151942407 - gi\|151942407\|gb\|EDN60763.1\| conserved protein [Saccharomyces cerevisiae YJM789]	0.0	[1..347]	[1..347]

Back

Predicted Domain #1

Region A:
Residues: [1-347]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTLLQLLSN YYKAKLDSER IYNEYVQSQY EFASLDKLNN NKGDPKKVVD ETLFLQRQIA  60
   61 QLNKQLQLSF QENEKLLSVQ KNQKALYQSK LSSKDAFIDD LKLKLKVEQI SVDKHNKERT 120
  121 PSTGRDEQQR NSKAAHTSKP TIHLLSPIVN RDKPNNQTND RGGNDPDSPT SQRRSRGLRS 180
  181 LLSSGKNTIF DSISKNLDDE INENAHIRND TTSSKIAGKS PSRLSALQKS PELRKERNNM 240
  241 ILKEHILRSK DDQNITSSRK LDNIELSSIG DSTAMTSRSS TVNANDILGN EENDGITKLK 300
  301 RVNKLTSSPV KRDCSTNKKR KLTKQRIATL PNSDEELSNN LNVDEFV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [255-347]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ITSSRKLDNI ELSSIGDSTA MTSRSSTVNA NDILGNEEND GITKLKRVNK LTSSPVKRDC  60
   61 STNKKRKLTK QRIATLPNSD EELSNNLNVD EFV