| Protein: | CAD1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 409 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAD1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..409] | [1..409] |
|
|
3.0E-38 | [4..184] | [137..319] |
|
|
5.0E-38 | [4..184] | [135..318] |
|
|
1.0E-37 | [3..184] | [128..305] |
|
|
1.0E-36 | [4..184] | [1..183] |
|
Region A: Residues: [1-133] |
1 11 21 31 41 51
| | | | | |
1 MGNILRKGQQ IYLAGDMKKQ MLLNKDGTPK RKVGRPGRKR IDSEAKSRRT AQNRAAQRAF 60
61 RDRKEAKMKS LQERVELLEQ KDAQNKTTTD FLLCSLKSLL SEITKYRAKN SDDERILAFL 120
121 DDLQEQQKRE NEK
|
| Detection Method: |  |
| Confidence: | 49.54902 |
| Match: | 1gd2E_ |
| Description: | PAP1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [134-260] |
1 11 21 31 41 51
| | | | | |
1 GTSTAVSKAA KELPSPNSDE NMTVNTSIEV QPHTQENEKV MWNIGSWNAP SLTNSWDSPP 60
61 GNRTGAVTIG DESINGSEMP DFSLDLVSND RQTGLEALDY DIHNYFPQHS ERLTAEKIDT 120
121 SACQCEI
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [261-326] |
1 11 21 31 41 51
| | | | | |
1 DQKYLPYETE DDTLFPSVLP LAVGSQCNNI CNRKCIGTKP CSNKEIKCDL ITSHLLNQKS 60
61 LASVLP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [327-409] |
1 11 21 31 41 51
| | | | | |
1 VAASHTKTIR TQSEAIEHIS SAISNGKASC YHILEEISSL PKYSSLDIDD LCSELIIKAK 60
61 CTDDCKIVVK ARDLQSALVR QLL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
