| Protein: | CAD1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 409 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAD1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..409] | [1..409] |
|
|
3.0E-38 | [4..184] | [137..319] |
|
|
5.0E-38 | [4..184] | [135..318] |
|
|
1.0E-37 | [3..184] | [128..305] |
|
|
1.0E-36 | [4..184] | [1..183] |
|
Region A: Residues: [1-133] |
1 11 21 31 41 51
| | | | | |
1 MGNILRKGQQ IYLAGDMKKQ MLLNKDGTPK RKVGRPGRKR IDSEAKSRRT AQNRAAQRAF 60
61 RDRKEAKMKS LQERVELLEQ KDAQNKTTTD FLLCSLKSLL SEITKYRAKN SDDERILAFL 120
121 DDLQEQQKRE NEK
|
| Detection Method: |  |
| Confidence: | 49.54902 |
| Match: | 1gd2E_ |
| Description: | PAP1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [134-260] |
1 11 21 31 41 51
| | | | | |
1 GTSTAVSKAA KELPSPNSDE NMTVNTSIEV QPHTQENEKV MWNIGSWNAP SLTNSWDSPP 60
61 GNRTGAVTIG DESINGSEMP DFSLDLVSND RQTGLEALDY DIHNYFPQHS ERLTAEKIDT 120
121 SACQCEI
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.395 | 0.424 | response to cadmium ion | a.3.1 | Cytochrome c |
| View | Download | 0.405 | 0.013 | response to cadmium ion | d.82.2 | Frataxin-like |
| View | Download | 0.258 | 0.008 | response to cadmium ion | b.89.1 | Cyanovirin-N |
| View | Download | 0.490 | N/A | N/A | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.307 | N/A | N/A | d.54.1 | Enolase N-terminal domain-like |
|
Region A: Residues: [261-326] |
1 11 21 31 41 51
| | | | | |
1 DQKYLPYETE DDTLFPSVLP LAVGSQCNNI CNRKCIGTKP CSNKEIKCDL ITSHLLNQKS 60
61 LASVLP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.591 | a.77.1 | DEATH domain |
| View | Download | 0.490 | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.455 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.405 | d.82.2 | Frataxin-like |
| View | Download | 0.395 | a.3.1 | Cytochrome c |
| View | Download | 0.372 | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
| View | Download | 0.349 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.343 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.342 | a.4.1 | Homeodomain-like |
| View | Download | 0.313 | a.77.1 | DEATH domain |
| View | Download | 0.308 | a.4.1 | Homeodomain-like |
| View | Download | 0.307 | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.294 | d.58.24 | CheY-binding domain of CheA |
| View | Download | 0.290 | a.4.1 | Homeodomain-like |
| View | Download | 0.283 | d.45.1 | ClpS-like |
| View | Download | 0.256 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.252 | d.64.1 | eIF1-like |
| View | Download | 0.250 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.242 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.235 | a.5.2 | UBA-like |
| View | Download | 0.233 | d.27.1 | Ribosomal protein S16 |
| View | Download | 0.227 | a.4.12 | TrpR-like |
| View | Download | 0.226 | a.15.1 | TAF(II)230 TBP-binding fragment |
| View | Download | 0.213 | d.58.49 | YajQ-like |
| View | Download | 0.213 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.211 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.208 | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.208 | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.204 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.204 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.203 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.202 | d.58.1 | 4Fe-4S ferredoxins |
|
Region A: Residues: [327-409] |
1 11 21 31 41 51
| | | | | |
1 VAASHTKTIR TQSEAIEHIS SAISNGKASC YHILEEISSL PKYSSLDIDD LCSELIIKAK 60
61 CTDDCKIVVK ARDLQSALVR QLL
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.590 | 0.376 | response to cadmium ion | a.39.1 | EF-hand |
| View | Download | 0.780 | 0.338 | response to cadmium ion | a.3.1 | Cytochrome c |
| View | Download | 0.722 | 0.037 | response to cadmium ion | a.156.1 | S13-like H2TH domain |
| View | Download | 0.512 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.480 | N/A | N/A | c.3.1 | FAD/NAD(P)-binding domain |
| View | Download | 0.469 | N/A | N/A | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.465 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.456 | N/A | N/A | c.10.2 | L domain-like |
| View | Download | 0.441 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.424 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.419 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.403 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.401 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.396 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.386 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.385 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.373 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.369 | N/A | N/A | a.3.1 | Cytochrome c |
| View | Download | 0.369 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.360 | N/A | N/A | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.359 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.348 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.299 | N/A | N/A | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.299 | N/A | N/A | a.83.1 | Guanido kinase N-terminal domain |
| View | Download | 0.298 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.298 | N/A | N/A | a.81.1 | N-terminal domain of DnaB helicase |
| View | Download | 0.288 | N/A | N/A | a.159.2 | FF domain |
| View | Download | 0.280 | N/A | N/A | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.276 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.273 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.266 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.260 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.260 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.258 | N/A | N/A | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.256 | N/A | N/A | a.159.2 | FF domain |
| View | Download | 0.255 | N/A | N/A | a.156.1 | S13-like H2TH domain |
| View | Download | 0.251 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.245 | N/A | N/A | a.101.1 | Uteroglobin-like |
| View | Download | 0.244 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.241 | N/A | N/A | a.65.1 | Annexin |
| View | Download | 0.237 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.229 | N/A | N/A | c.13.2 | Anti-sigma factor antagonist SpoIIaa |
| View | Download | 0.223 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.218 | N/A | N/A | d.55.1 | Ribosomal protein L22 |
| View | Download | 0.215 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.213 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.202 | N/A | N/A | a.156.1 | S13-like H2TH domain |
| View | Download | 0.201 | N/A | N/A | a.39.1 | EF-hand |
