YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP17
Organism:	Saccharomyces cerevisiae
Length:	101 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP17.

Description	E-value	Query Range	Subject Range
ATPK_SCHPO - ATP synthase subunit f, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=atp1... atp17 - F0 ATPase subunit F	144.0	[0..7]	[101..6]
gi\|44981679 - gi\|44981679\|gb\|AAS51429.1\| ACR203Wp [Ashbya gossypii ATCC 10895] gi\|45185889, gi\|... - gi\|45185889\|ref\|NP_983605.1\| ACR203Wp [Ashbya gossypii ATCC 10895], gi\|44981679\|gb\|AAS51429.1\| ACR20...	139.0	[0..1]	[97..43]
gi\|49524200 - gi\|49524200\|emb\|CAG57791.1\| unnamed protein product [Candida glabrata] gi\|49524200, gi\|... - gi\|50284941\|ref\|XP_444898.1\| hypothetical protein CAGL0A03036g [Candida glabrata CBS138], gi\|4952420...	134.0	[0..1]	[96..1]
gi\|49654948, gi\|... - gi\|50421461\|ref\|XP_459281.1\| hypothetical protein DEHA0D19811g [Debaryomyces hansenii CBS767], gi\|49... gi\|49654948 - gi\|49654948\|emb\|CAG87455.1\| DEHA2D18304p [Debaryomyces hansenii]	115.0	[0..2]	[97..4]
gi\|115400655, gi... - gi\|115400655\|ref\|XP_001215916.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	113.0	[0..2]	[96..4]
gi\|85105069 - gi\|85105069\|ref\|XP_961880.1\| hypothetical protein [Neurospora crassa OR74A] gi\|32408191, gi\|... - gi\|32408191\|ref\|XP_324577.1\| predicted protein [Neurospora crassa], gi\|28923463\|gb\|EAA32644.1\| predi...	112.0	[0..2]	[93..4]
gi\|70989661, gi\|... - gi\|70989661\|ref\|XP_749680.1\| mitochondrial F1F0 ATP synthase subunit F (Atp17) [Aspergillus fumigatu... gi\|159129087 - gi\|159129087\|gb\|EDP54201.1\| mitochondrial F1F0 ATP synthase subunit F (Atp17), putative [Aspergillus...	112.0	[0..2]	[96..4]
gi\|88179705, gi\|... - gi\|88179705\|gb\|EAQ87173.1\| hypothetical protein CHGG_03792 [Chaetomium globosum CBS 148.51], gi\|1161...	108.0	[0..2]	[92..4]
gi\|49648584 - gi\|49648584\|emb\|CAG80904.1\| YALI0D11814p [Yarrowia lipolytica] gi\|49648584, gi\|... - gi\|50550487\|ref\|XP_502716.1\| YALI0D11814p [Yarrowia lipolytica], gi\|49648584\|emb\|CAG80904.1\| unnamed...	106.0	[0..1]	[96..1]
gi\|38103708, gi\|... - gi\|39944248\|ref\|XP_361661.1\| hypothetical protein MG04135.4 [Magnaporthe grisea 70-15], gb\|EAA50376....	100.0	[0..2]	[96..4]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFKRAVSTL IPPKVVSSKN IGSAPNAKRI ANVVHFYKSL PQGPAPAIKA NTRLARYKAK  60
   61 YFDGDNASGK PLWHFALGII AFGYSMEYYF HLRHHKGAEE H

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits