YRC Public Data Repository - Protein Structure Prediction

Protein:	YDR374C
Organism:	Saccharomyces cerevisiae
Length:	306 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR374C.

Description	E-value	Query Range	Subject Range
YDR374C - Putative protein of unknown function MRB1_YEAST - Methylated RNA-binding protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PHO92 P... gi\|151942346 - gi\|151942346\|gb\|EDN60702.1\| conserved protein [Saccharomyces cerevisiae YJM789]	0.0	[1..306]	[1..306]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	6.0E-86	[40..306]	[208..481]
gi\|18412316, gi\|... - gi\|21280817\|gb\|AAM44922.1\| unknown protein [Arabidopsis thaliana], gi\|18412316\|ref\|NP_565205.1\| ECT8...	3.0E-85	[40..306]	[206..479]
gi\|19263664 - gi\|19263664\|gb\|AAH25264.1\| YTHDF1 protein [Homo sapiens]	2.0E-78	[103..305]	[281..481]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQIWSTGPP NFYFNSEWKE NKRNDRTIED SLRELDGLIH SLERTHIEVQ TNPKLKNDVT  60
   61 ALNDINKKEN KEEI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [75-306]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 THENYTHQIN SIPLTSSNLN RHFSFSRDYN QSDNSNNNYY REYLSKPRYL QQSTKEQTFN  60
   61 EINKRKSAAI IPPWLNIPEN SRFFVIKSSS LKHVKRSFYN GIWSSTHFGN KRLSEAYKKL 120
  121 NSGAKVFLFF SINTSGRFCG VAEMVSDLKM DLDTSIWEDE QKYGKAFKVR WVIVRDINNR 180
  181 SLKRFLIPSN EMKPITHSRD TQEIPYSIGI SIINLFKTQD SDIFSFLDET YE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits