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View Structure Prediction Details

Protein: YDR374C
Organism: Saccharomyces cerevisiae
Length: 306 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR374C.

Description E-value Query
Range
Subject
Range
YDR374C - Putative protein of unknown function
MRB1_YEAST - Methylated RNA-binding protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PHO92 P...
gi|151942346 - gi|151942346|gb|EDN60702.1| conserved protein [Saccharomyces cerevisiae YJM789]
0.0 [1..306] [1..306]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
6.0E-86 [40..306] [208..481]
gi|18412316, gi|... - gi|21280817|gb|AAM44922.1| unknown protein [Arabidopsis thaliana], gi|18412316|ref|NP_565205.1| ECT8...
3.0E-85 [40..306] [206..479]
gi|19263664 - gi|19263664|gb|AAH25264.1| YTHDF1 protein [Homo sapiens]
2.0E-78 [103..305] [281..481]

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Predicted Domain #1
Region A:
Residues: [1-74]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQIWSTGPP NFYFNSEWKE NKRNDRTIED SLRELDGLIH SLERTHIEVQ TNPKLKNDVT  60
   61 ALNDINKKEN KEEI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.607 a.60.9 lambda integrase-like, N-terminal domain
View Download 0.607 a.60.9 lambda integrase-like, N-terminal domain
View Download 0.599 a.4.1 Homeodomain-like
View Download 0.599 a.4.1 Homeodomain-like
View Download 0.598 a.112.1 Description not found.
View Download 0.598 a.112.1 Description not found.
View Download 0.560 a.4.1 Homeodomain-like
View Download 0.560 a.4.1 Homeodomain-like
View Download 0.538 a.13.1 alpha-2-Macroglobulin receptor associated protein (RAP) domain 1
View Download 0.538 a.13.1 alpha-2-Macroglobulin receptor associated protein (RAP) domain 1
View Download 0.482 a.60.6 DNA polymerase beta, N-terminal domain-like
View Download 0.464 c.47.1 Thioredoxin-like
View Download 0.448 a.2.8 Eukaryotic DNA topoisomerase I, dispensable insert domain
View Download 0.410 a.58.1 Chemotaxis receptor methyltransferase CheR, N-terminal domain
View Download 0.410 a.7.7 BAG domain
View Download 0.381 d.150.1 4'-phosphopantetheinyl transferase
View Download 0.376 a.16.1 S15/NS1 RNA-binding domain
View Download 0.357 a.16.1 S15/NS1 RNA-binding domain
View Download 0.356 a.24.13 Domain of the SRP/SRP receptor G-proteins
View Download 0.352 a.5.6 Hypothetical protein MTH1615
View Download 0.350 a.4.11 RNA polymerase subunit RPB10
View Download 0.335 a.64.1 Saposin
View Download 0.332 a.2.2 Ribosomal protein L29 (L29p)
View Download 0.321 a.22.1 Histone-fold
View Download 0.319 a.44.1 Disulphide-bond formation facilitator (DSBA), insertion domain
View Download 0.318 a.23.5 Hemolysin expression modulating protein HHA
View Download 0.315 a.17.1 p8-MTCP1
View Download 0.299 a.6.1 Putative DNA-binding domain
View Download 0.298 f.15.1 Small-conductance potassium channel
View Download 0.294 d.47.1 Ribosomal protein L11, N-terminal domain
View Download 0.293 a.57.1 Protein HNS-dependent expression A; HdeA
View Download 0.281 a.180.1 N-terminal, cytoplasmic domain of anti-sigmaE factor RseA
View Download 0.278 a.4.13 Sigma3 and sigma4 domains of RNA polymerase sigma factors
View Download 0.265 d.57.1 DNA damage-inducible protein DinI
View Download 0.264 a.7.6 Ribosomal protein S20
View Download 0.254 a.69.2 Ypt/Rab-GAP domain of gyp1p
View Download 0.254 a.4.9 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View Download 0.248 a.8.1 Bacterial immunoglobulin/albumin-binding domains
View Download 0.243 d.42.1 POZ domain
View Download 0.242 a.7.2 Enzyme IIa from lactose specific PTS, IIa-lac
View Download 0.239 a.2.7 tRNA-binding arm
View Download 0.237 a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.237 a.4.1 Homeodomain-like
View Download 0.226 a.24.17 Group V grass pollen allergen
View Download 0.226 f.34.1 Mechanosensitive channel protein MscS (YggB), transmembrane region
View Download 0.219 c.55.7 Methylated DNA-protein cysteine methyltransferase domain
View Download 0.214 a.59.1 PAH2 domain
View Download 0.213 a.29.4 RecG, N-terminal domain
View Download 0.204 a.46.1 Methionine synthase domain

Predicted Domain #2
Region A:
Residues: [75-306]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 THENYTHQIN SIPLTSSNLN RHFSFSRDYN QSDNSNNNYY REYLSKPRYL QQSTKEQTFN  60
   61 EINKRKSAAI IPPWLNIPEN SRFFVIKSSS LKHVKRSFYN GIWSSTHFGN KRLSEAYKKL 120
  121 NSGAKVFLFF SINTSGRFCG VAEMVSDLKM DLDTSIWEDE QKYGKAFKVR WVIVRDINNR 180
  181 SLKRFLIPSN EMKPITHSRD TQEIPYSIGI SIINLFKTQD SDIFSFLDET YE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle