| Protein: | CDC40 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 455 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDC40.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [15..455] | [833..1247] |
|
|
0.0 | [3..455] | [1055..1480] |
|
Region A: Residues: [1-124] |
1 11 21 31 41 51
| | | | | |
1 MGLVDGYDTS SDSDLNFDEG KSVHEKKNGN LHEDTSYEPS SNNIHKRKSH FTKSELKRRR 60
61 KTRKGDGPWG SWSSSDDETS QASETQKEDQ DIFVHALAED NLDSEQIEVE EVSHFYGKSE 120
121 KDYQ
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.286 | 0.004 | mitotic spindle organization in nucleus | a.90.1 | Transcription factor STAT-4 N-domain |
|
Region A: Residues: [125-455] |
1 11 21 31 41 51
| | | | | |
1 GRGYLYPPND VDVDLREERI SFRCYLPKKV IRNYPGHPEG TTALKFLPKT GHLILSGGND 60
61 HTIKIWDFYH DYECLRDFQG HNKPIKALRF TEDCQSFLSS SFDRSVKIWD TETGKVKTRL 120
121 HLNSTPADVE SRPTNPHEFI VGLSNSKILH YDDRVSENQG LVQTYDHHLS SILALKYFPD 180
181 GSKFISSSED KTVRIWENQI NVPIKQISDT AQHSMPFLNV HPSQNYFCAQ SMDNRIYSFS 240
241 LKPKYKRHPK KIFKGHSSAG YGISLAFSGD GRYICSGDSK SRLFTWDWNT SRLLNNIKIP 300
301 GNKPITQVDW HPQETSKVIC SGAAGKIYVC D
|
| Detection Method: | |
| Confidence: | 159.626727 |
| Match: | 1erjA_ |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
