YRC Public Data Repository - Protein Structure Prediction

Protein:	YDR348C
Organism:	Saccharomyces cerevisiae
Length:	499 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR348C.

Description	E-value	Query Range	Subject Range
YDR348C - Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell pe... PAL1_YEAST - Protein PAL1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PAL1 PE=1 SV=1 gi\|190404714 - gi\|190404714\|gb\|EDV07981.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] gi\|151942322 - gi\|151942322\|gb\|EDN60678.1\| conserved protein [Saccharomyces cerevisiae YJM789]	0.0	[1..499]	[1..499]
pal1 - membrane associated protein Pal1 PAL1_SCHPO - Protein pal1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pal1 PE=1 SV=1	1.0E-78	[53..458]	[7..362]
tho2 - THO complex subunit Tho2 THO2_SCHPO - THO complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tho2 PE=1 SV=3	9.0E-76	[54..326]	[1297..1566]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-75	[54..326]	[1302..1571]
gi\|9631254, gi\|4... - gi\|9631254\|ref\|NP_048035.1\| large tegument protein [Ateline herpesvirus 3], gi\|4019290\|gb\|AAC95588.1...	5.0E-49	[94..244]	[244..398]
gi\|76687 - gi\|76687\|pir\|\|H36812 hypothetical protein ORF64 - saimiriine herpesvirus 1 (strain 11) gi\|9626020, gi\|6... - gi\|9626020\|ref\|NP_040266.1\| hypothetical protein SaHV2gp65 [Saimiriine herpesvirus 2], gi\|60385\|emb\|... LTP_SHV21 - Large tegument protein deneddylase OS=Saimiriine herpesvirus 2 (strain 11) GN=64 PE=3 SV=1	4.0E-28	[94..228]	[244..383]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENRNSSTSS RPFSVNNPFR NATVDSSINQ YKNDSQFQEW AKNQSRTNSF DMPQLNTRTS  60
   61 SQLSFPNIPE DEPQRNA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [78-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DQQGAFYSGL ESFSSGSLSP PSRPLSSKNP FLDDVSSATD FRRSPPPVSR NKNHPTAKEE  60
   61 KEQLRQRYLE ESDVSTVGNT RENTDLPPSY EEITSTNGSR RAYPKEKVSR PSSHREHSNS 120
  121 GT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [200-406]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YISRRSSSHH HREASSSSTP SKKGKRKSKV IVPKNVDTID KLDVTGLFGG SFHHDGPFDA  60
   61 VTPHRNKNNK AAPVLAFPVD GPNSTIGGAS TKKSALDEVF GRDDTDDSDI YQYSSQTLRR 120
  121 GGDTQDAIKA NVGNVQQMDA KNKTELVHGP VTAGLGSSTF LDGAPASSAA IRNDIKAHSY 180
  181 HNRNGGLQRN KSLSQRLGLG GSGDSNA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [407-499]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PMTGVRRNLS LSRDNYDVGH SNEGVRRSKT VNSPNRTHKS NYTTDFDGQD DHNEDEEDVY  60
   61 LGVRYNEPNM KKKSTGSKLL SRVKSLKVGR KSQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits