| Protein: | MSN5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1224 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSN5.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1137] | [3..1126] |
|
|
0.0 | [1..1224] | [1..1224] |
|
|
0.0 | [1..1137] | [3..1126] |
|
|
0.0 | [3..1130] | [8..1150] |
|
|
0.0 | [457..1137] | [2..677] |
|
Region A: Residues: [1-253] |
1 11 21 31 41 51
| | | | | |
1 MDSTGASQIV SALDVIYSPK SNNSQRQEAQ KFLDEVKLCS ESPFWGYEIA LQNPTNSILK 60
61 YFGLGLLDHA VKKNWNDYDE GKRVALRKWV MELNFGVQDY DTRYIKEKLA TLWVEVAKRT 120
121 WGEALKQTNP TEEQLLTSWV DMDNNLFELW NINQSSRELA LIIFRILFED VFLLDDLIVL 180
181 KRMTVIQPLC VMIVCPIEVF AIKYKFSDKW TKFKANEEGW FSVWIPELNN ALQQNNSEYI 240
241 IRLLETLKTC LNW
|
| Detection Method: |  |
| Confidence: | 3.522879 |
| Match: | 1ibrB_ |
| Description: | Importin beta |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [254-393] |
1 11 21 31 41 51
| | | | | |
1 PLTEVIVRND VLSSLLTCLS SNIPRAQSMA LDSIHILLTR PYSNESHYQM TIDRVFDNMD 60
61 LLDSVYESLL FDPTDDIDET KYPIIKKFVD MISCLYVCVP KIKETNGQIQ KYFKLVLKTT 120
121 YNPSLIVSGL TLDLWCTCLR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [394-481] |
1 11 21 31 41 51
| | | | | |
1 NDEYLPKLEK YVIPDLLQFA ADALVYYEQI DGHISKKFAE IDFQSKSEFQ TFCSTYRKRI 60
61 RDIIRLISCV ELDLTYDWLN NRLNNYFS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.897 | N/A | N/A | a.46.1 | Methionine synthase domain |
|
Region A: Residues: [482-647] |
1 11 21 31 41 51
| | | | | |
1 SPFGQQVLSS TFLDHKLEPY LGALSQYMIV ECFINGCIRW KIWYPTGDDY DEKLDSILQK 60
61 LEILSNQLIA LNLREPLLLK KQIQNFALFL TMLKDNVLFT LLEKIITSAT MDYPEINLEE 120
121 RGAESDAVRD LRYACGIELN RMALLMPESL KKIYPDLESV IARIMP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.862 | N/A | N/A | a.7.7 | BAG domain |
|
Region A: Residues: [648-1131] |
1 11 21 31 41 51
| | | | | |
1 NLSYHEKISF KSFLLIIVLK SSLDMKEERF AAIVDPELLA WSDKTTVVGL SDLHWFMERL 60
61 GIVQIAEYFQ RRDIDENSDL LSIPIDDEGK ELKSELTKRW QSLFPVRATR MFIHYSMQSI 120
121 KTDEEFKMLQ DLWRPRIVPI LPYITRLLYQ LQSYHDPDNW KGLPTVVQSF VKYSTIERFW 180
181 EAGASNKSKD EFIDEHMKAM QTLRDFADSV GHIIRYTREY TLLVLSAISS LGSVFYLLDE 240
241 SPDLLLNSIA IFKPGSNEIS PGVSTHGWKH IMNIAIRPIL KGCPKDCLGK FMPAFLPKLF 300
301 EILDLLLCQK WSSHMNDMDM NPVPTDDDQM TEEILEENLL RQLTTVVVRI VIDCVGQGNA 360
361 NPNSAKSRLN NHQMEMRKII FNDLNTLAPF LKLLNHLISF KDTKCSFNSI LVMKCCLTSV 420
421 LNQNNTVDEY FTFEVMKNLL LNVLCNSAFK DSFHEALYAF TVIFLTLCKE YPSARAFLFE 480
481 ISNG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1132-1224] |
1 11 21 31 41 51
| | | | | |
1 YNIDELYRNL RSVDEYKTQR ALMIDFIDWV KSTSGKEDGN VDHAGDERKR QEKREAILKK 60
61 ANERLIKKNK ENGDMLDDPN IEDGAVGNLF DDN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [906-968] |
1 11 21 31 41 51
| | | | | |
1 ISPGVSTHGW KHIMNIAIRP ILKGCPKDCL GKFMPAFLPK LFEILDLLLC QKWSSHMNDM 60
61 DMN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [969-1147] |
1 11 21 31 41 51
| | | | | |
1 PVPTDDDQMT EEILEENLLR QLTTVVVRIV IDCVGQGNAN PNSAKSRLNN HQMEMRKIIF 60
61 NDLNTLAPFL KLLNHLISFK DTKCSFNSIL VMKCCLTSVL NQNNTVDEYF TFEVMKNLLL 120
121 NVLCNSAFKD SFHEALYAFT VIFLTLCKEY PSARAFLFEI SNGYNIDELY RNLRSVDEY
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1148-1224] |
1 11 21 31 41 51
| | | | | |
1 KTQRALMIDF IDWVKSTSGK EDGNVDHAGD ERKRQEKREA ILKKANERLI KKNKENGDML 60
61 DDPNIEDGAV GNLFDDN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
