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View Structure Prediction Details

Protein: PEX3
Organism: Saccharomyces cerevisiae
Length: 441 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PEX3.

Description E-value Query
Range
Subject
Range
PEX3_KLULA - Peroxisomal biogenesis factor 3 OS=Kluyveromyces lactis GN=PEX3 PE=3 SV=1
PEX3_KLULA - Peroxisomal biogenesis factor 3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / N...
455.0 [0..7] [433..4]
PEX3_PICPA - Peroxisomal biogenesis factor 3 OS=Komagataella pastoris GN=PEX3 PE=1 SV=1
441.0 [0..5] [431..3]
PEX3_PICAN - Peroxisomal biogenesis factor 3 OS=Pichia angusta GN=PEX3 PE=3 SV=1
PEX3_PICAN - Peroxisomal biogenesis factor 3 OS=Pichia angusta GN=PEX3 PE=3 SV=1
441.0 [0..5] [431..3]
PEX3_MOUSE - Peroxisomal biogenesis factor 3 OS=Mus musculus GN=Pex3 PE=1 SV=1
424.0 [0..9] [431..7]
PEX3_RAT - Peroxisomal biogenesis factor 3 OS=Rattus norvegicus GN=Pex3 PE=1 SV=1
414.0 [0..9] [431..7]
PEX3_CRILO - Peroxisomal biogenesis factor 3 OS=Cricetulus longicaudatus GN=PEX3 PE=2 SV=1
tr|G3H6X1|G3H6X1... - Peroxisomal biogenesis factor 3 OS=Cricetulus griseus GN=I79_006091 PE=4 SV=1
412.0 [0..9] [431..7]
gi|73946081 - gi|73946081|ref|XP_541132.2| PREDICTED: similar to Peroxisomal biogenesis factor 3 (Peroxin-3) (Pero...
405.0 [0..9] [431..121]
gi|109072523 - gi|109072523|ref|XP_001091411.1| PREDICTED: peroxisomal biogenesis factor 3 [Macaca mulatta]
PEX3_MACFA - Peroxisomal biogenesis factor 3 OS=Macaca fascicularis GN=PEX3 PE=2 SV=1
399.0 [0..9] [431..7]
gi|55627480 - gi|55627480|ref|XP_518776.1| PREDICTED: peroxisomal biogenesis factor 3 isoform 2 [Pan troglodytes]
398.0 [0..9] [431..7]

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Predicted Domain #1
Region A:
Residues: [1-121]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPNQRSRSL LQRHRGKVLI SLTGIAALFT TGSVVVFFVK RWLYKQQLRI TEQHFIKEQI  60
   61 KRRFEQTQED SLYTIYELLP VWRMVLNEND LNLDSIVTQL KDQKNQLTRA KSSESRESSP 120
  121 L

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.906 c.52.1 Restriction endonuclease-like

Predicted Domain #2
Region A:
Residues: [122-441]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSKAELWNEL ELKSLIKLVT VTYTVSSLIL LTRLQLNILT RNEYLDSAIK LTMQQENCNK  60
   61 LQNRFYNWVT SWWSDPEDKA DDAMVMAAKK SKKEGQEVYI NEQAFLSLSW WILNKGWLSY 120
  121 NEIITNQIEI EFDGIHPRDT LTLEEFSSRL TNIFRNTNSQ IFQQNNNNLT SILLPKDSSG 180
  181 QEFLLSQTLD ADALTSFHSN TLVFNQLVNE LTQCIESTAT SIVLESLINE SFHFIMNKVG 240
  241 IKTIAKKKPG QEDQQQYQMA VFAMSMKDCC QEMLQTTAGS SHSGSVNEYL ATLDSVQPLD 300
  301 DLSASVYSNF GVSSSFSFKP 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle