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View Structure Prediction Details

Protein: MRPL35
Organism: Saccharomyces cerevisiae
Length: 367 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL35.

Description E-value Query
Range		 Subject
Range
RM35_YEAST - 54S ribosomal protein L35, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...
gi|151942298 - gi|151942298|gb|EDN60654.1| YmL35 [Saccharomyces cerevisiae YJM789]
MRPL35 - Mitochondrial ribosomal protein of the large subunit
 0.0 [1..367] [1..367]
gi|220948718 - gi|220948718|gb|ACL86902.1| mRpL38-PA [synthetic construct]
mRpL38-PA - The gene mitochondrial ribosomal protein L38 is referred to in FlyBase by the symbol Dmel\mRpL38 (CG...
 8.0E-69 [52..364] [38..330]
gi|51859245 - gb|AAH82198.1| MGC98748 protein [Xenopus laevis]
gi|13195606, gi|... - gi|74195960|dbj|BAE30538.1| unnamed protein product [Mus musculus], gi|30851523|gb|AAH52494.1| Mitoc...
 1.0E-65 [58..366] [41..312]
SPBC2F12.10 - mitochondrial ribosomal protein subunit L35
RM35_SCHPO - 60S ribosomal protein L35, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=S...
 9.0E-58 [71..354] [88..354]
OV16_ONCVO - OV-16 antigen OS=Onchocerca volvulus GN=OV16 PE=2 SV=2
 5.0E-53 [145..345] [23..197]
gi|109098924, gi... - gi|109098926|ref|XP_001084621.1| PREDICTED: phosphatidylethanolamine binding protein 1 isoform 2 [Ma...
PEBP1_MACFA - Phosphatidylethanolamine-binding protein 1 OS=Macaca fascicularis GN=PEBP1 PE=2 SV=2
 2.0E-52 [171..354] [18..184]
ENSPTRT00000010122 - null
PEBP1 - phosphatidylethanolamine binding protein 1
 6.0E-52 [171..354] [18..184]
PEBP1_BOVIN - Phosphatidylethanolamine-binding protein 1 OS=Bos taurus GN=PEBP1 PE=1 SV=2
 7.0E-52 [171..354] [18..184]

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Predicted Domain #1
Region A:
Residues: [1-135] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRRSIHTTK ILQKPNATSH IWSDFTTRPS SLSIQSSKVK NYLFQKKASL DPPSISRRSN  60
   61 RIKYSPPEHI DEIFRMSYDF LEQRSSKFYE LANKTKNPLK KDALLIKAEI NNPEVQYNFQ 120
  121 FNNKLNNVKD IIDYD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [136-367] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPVYRHLGKQ HWESYGQMLL MQRLETLAAI PDTLPTLVPR AEVNIKFPFS TGVNKWIEPG  60
   61 EFLSSNVTSM RPIFKIQEYE LVNVEKQLYT VLIVNPDVPD LSNDSFKTAL CYGLVNINLT 120
  121 YNDNLIDPRK FHSSNIIADY LPPVPEKNAG KQRFVVWVFR QPLIEDKQGP NMLEIDRKEL 180
  181 SRDDFDIRQF TKKYNLTAIG AHIWRSEWDA KVAAVREKYG LPPGRVFSRV RR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 108.228787
Match: 1kn3A_
Description: Phosphatidylethanolamine binding protein, PEBP
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle