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View Structure Prediction Details

Protein: TIM11
Organism: Saccharomyces cerevisiae
Length: 96 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIM11.

Description E-value Query
Range		 Subject
Range
gi|151942299 - gi|151942299|gb|EDN60655.1| F1F0 ATP synthase subunit e [Saccharomyces cerevisiae YJM789]
gi|190404736 - gi|190404736|gb|EDV08003.1| ATP synthase e chain, mitochondrial [Saccharomyces cerevisiae RM11-1a]
TIM11 - Subunit e of mitochondrial F1F0-ATPase, which is a large, evolutionarily conserved enzyme complex re...
ATPJ_YEAST - ATP synthase subunit e, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TI...
 6.0E-49 [1..96] [1..96]

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Predicted Domain #1
Region A:
Residues: [1-96] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTVNVLRYS ALGLGLFFGF RNDMILKCNA KKKEEQAQYE EKLKLVEEAK KEYAKLHPVV  60
   61 TPKDVPANAS FNLEDPNIDF ERVILNAVES LKEAST

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score		 GO
Score		 GO
Term		 SCOP
Match		 SCOP Description
View Download 0.615 0.020 ATP synthesis coupled proton transport a.25.1 Ferritin-like
View Download 0.730 0.020 ATP synthesis coupled proton transport a.24.9 alpha-catenin/vinculin
View Download 0.858 0.020 ATP synthesis coupled proton transport a.47.2 t-snare proteins
View Download 0.802 0.020 ATP synthesis coupled proton transport a.23.1 HSC20 (HSCB), C-terminal oligomerisation domain
View Download 0.583 0.020 ATP synthesis coupled proton transport a.60.6 DNA polymerase beta, N-terminal domain-like
View Download 0.565 0.020 ATP synthesis coupled proton transport d.14.1 Ribosomal protein S5 domain 2-like
View Download 0.536 0.020 ATP synthesis coupled proton transport a.7.5 Tubulin chaperone cofactor A
View Download 0.532 0.020 ATP synthesis coupled proton transport a.7.1 Spectrin repeat
View Download 0.495 0.020 ATP synthesis coupled proton transport a.48.1 N-terminal domain of cbl (N-cbl)
View Download 0.470 0.020 ATP synthesis coupled proton transport a.36.1 Signal peptide-binding domain
View Download 0.462 0.020 ATP synthesis coupled proton transport a.2.6 Effector domain of the protein kinase pkn/prk1
View Download 0.452 0.020 ATP synthesis coupled proton transport a.59.1 PAH2 domain
View Download 0.442 0.020 ATP synthesis coupled proton transport d.14.1 Ribosomal protein S5 domain 2-like
View Download 0.426 0.020 ATP synthesis coupled proton transport a.121.1 Tetracyclin repressor-like, C-terminal domain
View Download 0.423 0.020 ATP synthesis coupled proton transport a.2.1 GreA transcript cleavage protein, N-terminal domain
View Download 0.423 0.020 ATP synthesis coupled proton transport d.74.1 Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)
View Download 0.420 0.020 ATP synthesis coupled proton transport d.222.1 YbaB-like
View Download 0.414 0.020 ATP synthesis coupled proton transport a.24.4 Hemerythrin
View Download 0.413 0.020 ATP synthesis coupled proton transport a.7.7 BAG domain
View Download 0.396 0.020 ATP synthesis coupled proton transport d.54.1 Enolase N-terminal domain-like
View Download 0.396 0.020 ATP synthesis coupled proton transport d.52.7 Ribosome-binding factor A, RbfA
View Download 0.391 0.020 ATP synthesis coupled proton transport a.158.1 F-box domain
View Download 0.390 0.020 ATP synthesis coupled proton transport f.13.1 Family A G protein-coupled receptor-like
View Download 0.375 0.020 ATP synthesis coupled proton transport a.40.1 Calponin-homology domain, CH-domain
View Download 0.373 0.020 ATP synthesis coupled proton transport a.22.1 Histone-fold
View Download 0.372 0.020 ATP synthesis coupled proton transport a.45.1 Glutathione S-transferase (GST), C-terminal domain
View Download 0.368 0.020 ATP synthesis coupled proton transport a.24.11 Bacterial GAP domain
View Download 0.368 0.020 ATP synthesis coupled proton transport a.3.1 Cytochrome c
View Download 0.367 0.020 ATP synthesis coupled proton transport a.24.1 Apolipoprotein
View Download 0.360 0.020 ATP synthesis coupled proton transport a.47.2 t-snare proteins
View Download 0.358 0.020 ATP synthesis coupled proton transport a.7.8 GAT domain
View Download 0.353 0.020 ATP synthesis coupled proton transport a.4.5 "Winged helix" DNA-binding domain
View Download 0.341 0.020 ATP synthesis coupled proton transport a.7.1 Spectrin repeat
View Download 0.339 0.020 ATP synthesis coupled proton transport a.13.1 alpha-2-Macroglobulin receptor associated protein (RAP) domain 1
View Download 0.337 0.020 ATP synthesis coupled proton transport a.118.14 FliG
View Download 0.336 0.020 ATP synthesis coupled proton transport a.2.11 Fe,Mn superoxide dismutase (SOD), N-terminal domain
View Download 0.335 0.020 ATP synthesis coupled proton transport a.26.1 4-helical cytokines
View Download 0.324 0.020 ATP synthesis coupled proton transport a.77.1 DEATH domain
View Download 0.308 0.020 ATP synthesis coupled proton transport a.24.3 Cytochromes
View Download 0.301 0.020 ATP synthesis coupled proton transport a.2.7 tRNA-binding arm
View Download 0.301 0.020 ATP synthesis coupled proton transport a.26.1 4-helical cytokines
View Download 0.298 0.020 ATP synthesis coupled proton transport f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore
View Download 0.296 0.020 ATP synthesis coupled proton transport a.45.1 Glutathione S-transferase (GST), C-terminal domain
View Download 0.296 0.020 ATP synthesis coupled proton transport b.55.1 PH domain-like
View Download 0.294 0.020 ATP synthesis coupled proton transport a.105.1 FIS-like
View Download 0.293 0.020 ATP synthesis coupled proton transport a.26.1 4-helical cytokines
View Download 0.293 0.020 ATP synthesis coupled proton transport a.28.3 Retrovirus capsid protein C-terminal domain
View Download 0.288 0.020 ATP synthesis coupled proton transport f.14.1 Voltage-gated potassium channels
View Download 0.286 0.020 ATP synthesis coupled proton transport d.13.1 HIT-like
View Download 0.286 0.020 ATP synthesis coupled proton transport f.34.1 Mechanosensitive channel protein MscS (YggB), transmembrane region
View Download 0.285 0.020 ATP synthesis coupled proton transport a.60.1 SAM/Pointed domain
View Download 0.282 0.020 ATP synthesis coupled proton transport a.7.7 BAG domain
View Download 0.282 0.020 ATP synthesis coupled proton transport a.63.1 Apolipophorin-III
View Download 0.280 0.020 ATP synthesis coupled proton transport a.4.5 "Winged helix" DNA-binding domain
View Download 0.280 0.020 ATP synthesis coupled proton transport a.25.1 Ferritin-like
View Download 0.276 0.020 ATP synthesis coupled proton transport a.7.1 Spectrin repeat
View Download 0.274 0.020 ATP synthesis coupled proton transport d.74.3 RBP11-like subunits of RNA polymerase
View Download 0.267 0.020 ATP synthesis coupled proton transport a.108.1 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
View Download 0.266 0.020 ATP synthesis coupled proton transport f.18.1 F1F0 ATP synthase subunit A
View Download 0.265 0.020 ATP synthesis coupled proton transport d.38.1 Thioesterase/thiol ester dehydrase-isomerase
View Download 0.261 0.020 ATP synthesis coupled proton transport a.7.1 Spectrin repeat
View Download 0.260 0.020 ATP synthesis coupled proton transport a.4.5 "Winged helix" DNA-binding domain
View Download 0.251 0.020 ATP synthesis coupled proton transport d.13.1 HIT-like
View Download 0.251 0.020 ATP synthesis coupled proton transport a.64.1 Saposin
View Download 0.247 0.020 ATP synthesis coupled proton transport c.47.1 Thioredoxin-like
View Download 0.247 0.020 ATP synthesis coupled proton transport a.7.3 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
View Download 0.232 0.020 ATP synthesis coupled proton transport d.54.1 Enolase N-terminal domain-like
View Download 0.226 0.020 ATP synthesis coupled proton transport d.224.1 SufE-like
View Download 0.226 0.020 ATP synthesis coupled proton transport a.4.9 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View Download 0.225 0.020 ATP synthesis coupled proton transport a.24.3 Cytochromes
View Download 0.224 0.020 ATP synthesis coupled proton transport a.73.1 Retrovirus capsid protein, N-terminal core domain
View Download 0.223 0.020 ATP synthesis coupled proton transport a.4.1 Homeodomain-like
View Download 0.223 0.020 ATP synthesis coupled proton transport a.26.1 4-helical cytokines
View Download 0.222 0.020 ATP synthesis coupled proton transport a.73.1 Retrovirus capsid protein, N-terminal core domain
View Download 0.219 0.020 ATP synthesis coupled proton transport a.18.1 T4 endonuclease V
View Download 0.215 0.020 ATP synthesis coupled proton transport a.8.1 Bacterial immunoglobulin/albumin-binding domains
View Download 0.203 0.020 ATP synthesis coupled proton transport a.79.1 Antitermination factor NusB
View Download 0.201 0.020 ATP synthesis coupled proton transport a.45.1 Glutathione S-transferase (GST), C-terminal domain

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle