Protein: | SWA2 |
Organism: | Saccharomyces cerevisiae |
Length: | 668 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SWA2.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..668] | [1..668] |
|
2.0E-68 | [3..667] | [54..697] |
|
8.0E-58 | [82..621] | [199..673] |
|
4.0E-55 | [2..575] | [43..571] |
|
2.0E-54 | [116..666] | [15..590] |
|
2.0E-51 | [269..633] | [81..461] |
|
3.0E-51 | [269..633] | [71..451] |
Region A: Residues: [1-352] |
1 11 21 31 41 51 | | | | | | 1 MSDPFAHLLT SLKNKDSASA SKETTPQSSN SPSITGSAVA DVARTDKSPN DSLHSISAPP 60 61 LIPSPKVDFS APPLVPTNST TKSNTANNTP PSALANTDDD FNQLFGMGTV TTTDTIQKPD 120 121 EDYYGSKEDH LYNGDDALVD EVKDMEIARL MSLGLSIEEA TEFYENDVTY ERYLEILKSK 180 181 QKERNDLAIR KKESGIKMEK SGLSNIVGTD SNNLFSMATD FFNKGKKLVD QWTSFPPEAN 240 241 DRLNNYSKTH DKVEDYDLPQ VNDSPNRILF EDNEVVENLP PADNPDQDLL TDFETKIDIT 300 301 KRTAPDVSHS SSPTSGILIE ENSRRNEPLI EDSLLDFSEG NLTNSKSNED ST |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [353-543] |
1 11 21 31 41 51 | | | | | | 1 LFNENSNTDS TIPISDIELS GYNEFKAKGT SLFKNGDYIN SLQEYEKSLN TLPLNHPLRI 60 61 IALSNIIASQ LKIGEYSKSI ENSSMALELF PSSKAKWKNK ISNSDPERSF NDIWPKIMIR 120 121 RAESFEHLES FKKALETYQE LIKKNFFDDK IMQGKRRCQD FINPPPVKKS MPVKKKTTTT 180 181 SPATKKQNLT A |
Detection Method: | |
Confidence: | 52.70927 |
Match: | 1elwA_ |
Description: | Hop |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [544-598] |
1 11 21 31 41 51 | | | | | | 1 SSSNSPISVD STSEIKKREL ENAKLALYDK VFEKISSWKD GKDDDIRHLL ANLSS |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.384 | a.60.1 | SAM/Pointed domain |
View | Download | 0.299 | a.5.2 | UBA-like |
View | Download | 0.382 | a.16.1 | S15/NS1 RNA-binding domain |
View | Download | 0.309 | a.60.2 | RuvA domain 2-like |
View | Download | 0.335 | a.17.1 | p8-MTCP1 |
View | Download | 0.293 | a.7.6 | Ribosomal protein S20 |
View | Download | 0.283 | a.60.2 | RuvA domain 2-like |
View | Download | 0.253 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
View | Download | 0.243 | a.36.1 | Signal peptide-binding domain |
View | Download | 0.241 | a.17.1 | p8-MTCP1 |
View | Download | 0.229 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
View | Download | 0.200 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
Term | Confidence | Notes |
binding | 2.0541759325193 | bayes_pls_golite062009 |
protein binding | 1.81676109739118 | bayes_pls_golite062009 |
Region A: Residues: [599-668] |
1 11 21 31 41 51 | | | | | | 1 LLTWCNWKDV SMQDLVMPKR VKITYMKAVA KTHPDKIPES LSLENKMIAE NIFSTLSIAW 60 61 DKFKLQNDIN |
Detection Method: | |
Confidence: | 4.522879 |
Match: | 1xbl__ |
Description: | DnaJ chaperone, N-terminal (J) domain |
Matching Structure (courtesy of the PDB): |