YRC Public Data Repository - Protein Structure Prediction

Protein:	RAD34
Organism:	Saccharomyces cerevisiae
Length:	692 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAD34.

Description	E-value	Query Range	Subject Range
gi\|151942286 - gi\|151942286\|gb\|EDN60642.1\| conserved protein [Saccharomyces cerevisiae YJM789] gi\|190404744 - gi\|190404744\|gb\|EDV08011.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] RAD34_YEAST - DNA repair protein RAD34 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD34 PE=1 SV=1 RAD34 - Protein involved in nucleotide excision repair (NER); homologous to RAD4	0.0	[1..692]	[1..692]
RHP41_SCHPO - DNA repair protein rhp41 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp41 PE=3 SV=1 rhp41 - DNA repair protein Rhp41	0.0	[19..680]	[3..638]
gi\|447739 - gi\|447739\|prf\|\|1915304A nylB upstream ORF	0.0	[307..684]	[395..753]
gi\|15487337 - gi\|15487337\|dbj\|BAB64540.1\| xeroderma pigmentosum group C protein [Mus musculus]	0.0	[307..684]	[505..863]
gi\|119584592, gi... - gi\|21914794\|gb\|AAM77801.1\| xeroderma pigmentosum, complementation group C [Homo sapiens], gi\|2012746...	0.0	[307..684]	[512..870]

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Predicted Domain #1

Region A:
Residues: [1-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKRLLESSQ NDQANRKNSK IEKKEVSFYE EEETDDSFDS FYQDEEDDLS DIDWEEVSLD  60
   61 GSLTVTFGNI RRDREKVSKY KRKHNKKAFN YQRLKYGLHL IMIPFMLFLL KSRMKWIDDE 120
  121 RLNRRLRRSV PKLIGKKFKD WDVRDPAFKM DSLRTLLLGL VLWFRSNYKM NSNGIRQNFN 180
  181 RLQYLIKYAD NQNENSISES TYKKVLENQQ EFYGNRPLIN HGVEDIRKMA KRKMANRDIL 240
  241 TLFFFIILEN VLPGPKKLYL CFALPLHDY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [270-692]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIRCNKVKWQ IEHGIGKVPN RFDSDLIQPY FWIELEVPTL SDGELYIIDP IAHLGEREMV  60
   61 LKTREDQFVP TYQPSVDMKY NLNQKFHYVV RINHAEKVLQ DVSPRYVPNV CYRYFELSES 120
  121 SPILKSKHYT SYQYLSKWLK VLNKKKASVH HYAIMKKIAL TNFTLPKSVT EIKRTDNFVI 180
  181 PSLLKSNEVL KACAKQAATF TKGDNSQEPI FWRRDVIQLK SKQHWAILGR SILPNAQPLK 240
  241 RKKYLPMRER MVRNLDKYVI KELFSYEQTM KSPKYPSTYC DHLGQEHVIT DLSHYKNKFG 300
  301 NIEIYSKETK PDGFELIPLS KEVDIKCLIK EYNKGKRKMQ KIKYLDVVSG FDFKQKKGHA 360
  361 IPKIESILVK ETDYKAVQLL KQQTKVLLGL SFWDILLRKL RVNDRLNAEY GNVGNNEETL 420
  421 DDH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	6.721246
Match:	PF03835
Description:	DNA repair protein Rad4

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits