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View Structure Prediction Details

Protein: YDR307W
Organism: Saccharomyces cerevisiae
Length: 662 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR307W.

Description E-value Query
Range
Subject
Range
gi|14625800 - gi|14625800|gb|AAK71510.1| dolichyl-phosphate-mannose:protein mannosyltransferase [Emericella nidula...
gi|49095562, gi|... - gi|67537870|ref|XP_662709.1| hypothetical protein AN5105.2 [Aspergillus nidulans FGSC A4], ref|XP_40...
0.0 [22..662] [51..688]
gi|15011522 - gi|15011522|gb|AAK77607.1|AF396953_1 protein O-mannosyl transferase [Aspergillus awamori]
0.0 [13..662] [38..689]
gi|32415215, gi|... - gi|9368945|emb|CAB99175.1| probable dolichyl-phosphate-mannose--protein mannosyltransferase [Neurosp...
gi|85079003 - gi|85079003|ref|XP_956270.1| probable dolichyl-phosphate-mannose--protein mannosyltransferase [MIPS]...
0.0 [9..662] [31..696]
PMT1_CANAL - Dolichyl-phosphate-mannose--protein mannosyltransferase 1 OS=Candida albicans (strain SC5314 / ATCC ...
PMT1_CANAL - Dolichyl-phosphate-mannose--protein mannosyltransferase 1 OS=Candida albicans GN=PMT1 PE=3 SV=1
0.0 [7..661] [40..690]
PMT1 - Protein O-mannosyltransferase, transfers mannose residues from dolichyl phosphate-D-mannose to prote...
PMT1_YEAST - Dolichyl-phosphate-mannose--protein mannosyltransferase 1 OS=Saccharomyces cerevisiae (strain ATCC 2...
0.0 [7..660] [23..674]
POMT2 - protein-O-mannosyltransferase 2
0.0 [32..660] [59..680]

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Predicted Domain #1
Region A:
Residues: [1-270]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDLRLQGPY RKYIPYNIFQ QCGIGHLKTL DYIFAFLIVI TNFTLIWKSH SSSFWNRPWD  60
   61 NNSEQELSQL IQFYLDKAFY IHELPPFTIQ FYSIIRRLKI AENLRYVSLF LNSSTLGFLF 120
  121 LITRRINCSR LISATGLLIL SNWETFRNEG TIISFDSLEW CLFSVVIYSF ISISIAKLGT 180
  181 TNWFANVITL SISLGLAISS KFIGIVTWAF VILSFVRQFD RLISDVKVTT IQIIKFVILC 240
  241 LLFVLIIPGS IFIISYSNLL SNFKTDTPQF 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [271-353]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKYMSTYFKS YLRGPQVQPS RLYYGSTITL RHLDSMVGYL ASHDISYPSD VDEQLVALSF  60
   61 EEFAADNEWL IEHPTLNLSF SEV

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 10.102373
Match: PF02815
Description: MIR domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term Confidence Notes
dolichyl-phosphate-mannose-protein mannosyltransferase activity 1.85200465544174 bayes_pls_golite062009
mannosyltransferase activity 0.48975864011477 bayes_pls_golite062009
inositol-1,4,5-trisphosphate receptor activity 0.461594694251104 bayes_pls_golite062009
calcium channel activity 0.0670479495205552 bayes_pls_golite062009
calcium ion transmembrane transporter activity 0.0604476065893933 bayes_pls_golite062009
binding 0.0558310434521505 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [354-426]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YHADQLIPVE FGQSIKLRHK STGKLLRAST AKPPISEQDY DFQISCTKDS NYEGGMDERW  60
   61 DVLLIKDEIN NDK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 5.522879
Match: PF02815
Description: MIR domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [427-497]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDNADDKYIK PLQSEIRFYN NGQRCGLLGH DLRLPEWGRF EQEVLCMEYP VIPRTTFLID  60
   61 SVQLPVDFQV P

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 6.124939
Match: PF02815
Description: MIR domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [498-563]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEYYIGKIS SSAEFNHTLS WSQFLYLFKE YIFKQYKYNY YIKYGKNKVT FEDAFAVEKW  60
   61 PITLDT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [564-662]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSPVWFNFAW YGSLLSMIIF MCVQCKRMIS WNPWTTAEPS FSIKWEVYNE FGWECIVGWF  60
   61 LHFYIFTMSP HFNLGKKLYF QSFFFSVLCL LESLDCLAK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle