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View Structure Prediction Details

Protein: CFT1
Organism: Saccharomyces cerevisiae
Length: 1357 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CFT1.

Description E-value Query
Range
Subject
Range
CPSF1_BOVIN - Cleavage and polyadenylation specificity factor subunit 1 OS=Bos taurus GN=CPSF1 PE=1 SV=1
0.0 [1..1347] [1..1438]
gi|123999626, gi... - gi|123999626|gb|ABM87355.1| cleavage and polyadenylation specific factor 1, 160kDa [synthetic constr...
CPSF1 - cleavage and polyadenylation specific factor 1, 160kDa
0.0 [1..1347] [1..1437]
CPSF1_MOUSE - Cleavage and polyadenylation specificity factor subunit 1 OS=Mus musculus GN=Cpsf1 PE=1 SV=1
0.0 [1..1347] [1..1435]
CFT1 - RNA-binding subunit of the mRNA cleavage and polyadenylation factor; involved in poly(A) site recogn...
CFT1_YEAST - Protein CFT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CFT1 PE=1 SV=1
0.0 [1..1357] [1..1357]
Cpsf160-PB - The gene Cleavage and polyadenylation specificity factor 160 is referred to in FlyBase by the symbol...
0.0 [5..1347] [6..1414]
DDB1B_ARATH - DNA damage-binding protein 1b OS=Arabidopsis thaliana GN=DDB1B PE=2 SV=2
0.0 [7..1346] [10..1084]

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Predicted Domain #1
Region A:
Residues: [1-722]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVYDDVLDA TVVSHSLATH FTTSDYEELL VVRTNILSVY RPTRDGKLYL TDEFKFHGLI  60
   61 TDIGLIPQKD SPLSCLLLCT GVAKISILKF NTLTNSIDTL SLHYYEGKFK GKSLVELAKI 120
  121 STLRMDPGSS CALLFNNDII AFLPFHVNKN DDDEEEEDED ENIDDSELIH SMNQKSQGTN 180
  181 TFNKRKRTKL GDKFTAPSVV LVASELYEGA KNIIDIQFLK NFTKPTIALL YQPKLVWAGN 240
  241 TTISKLPTQY VILTLNIQPA ESATKIESTT IAFVKELPWD LHTIVPVSNG AIIVGTNELA 300
  301 FLDNTGVLQS TVLLNSFADK ELQKTKIINN SSLEIMFREK NTTSIWIPSS KSKNGGSNND 360
  361 ETLLLMDLKS NIYYIQMEAE GRLLIKFDIF KLPIVNDLLK ENSNPKCITR LNATNSNKNM 420
  421 DLFIGFGSGN ALVLRLNNLK STIETREAHN PSSGTNSLMD INDDDDEEMD DLYADEAPEN 480
  481 GLTTNDSKGT VETVQPFDIE LLSSLRNVGP ITSLTVGKVS SIDDVVKGLP NPNKNEYSLV 540
  541 ATSGNGSGSH LTVIQTSVQP EIELALKFIS ITQIWNLKIK GRDRYLITTD STKSRSDIYE 600
  601 SDNNFKLHKG GRLRRDATTV YISMFGEEKR IIQVTTNHLY LYDTHFRRLT TIKFDYEVIH 660
  661 VSVMDPYILV TVSRGDIKIF ELEEKNKRKL LKVDLPEILN EMVITSGLIL KSNMCNEFLI 720
  721 GL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [723-986]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKSQEEQLLF TFVTADNQII FFTKDHNDRI FQLNGVDQLN ESLYISTYQL GDEIVPDPSI  60
   61 KQVMINKLGH DNKEEYLTIL TFGGEIYQYR KLPQRRSRFY RNVTRNDLAI TGAPDNAYAK 120
  121 GVSSIERIMH YFPDYNGYSV IFVTGSVPYI LIKEDDSTPK IFKFGNIPLV SVTPWSERSV 180
  181 MCVDDIKNAR VYTLTTDNMY YGNKLPLKQI KISNVLDDYK TLQKLVYHER AQLFLVSYCK 240
  241 RVPYEALGED GEKVIGYDEN VPHA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [987-1357]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGFQSGILLI NPKSWKVIDK IDFPKNSVVN EMRSSMIQIN SKTKRKREYI IAGVANATTE  60
   61 DTPPTGAFHI YDVIEVVPEP GKPDTNYKLK EIFQEEVSGT VSTVCEVSGR FMISQSQKVL 120
  121 VRDIQEDNSV IPVAFLDIPV FVTDSKSFGN LLIIGDAMQG FQFIGFDAEP YRMISLGRSM 180
  181 SKFQTMSLEF LVNGGDMYFA ATDADRNVHV LKYAPDEPNS LSGQRLVHCS SFTLHSTNSC 240
  241 MMLLPRNEEF GSPQVPSFQN VGGQVDGSVF KIVPLSEEKY RRLYVIQQQI IDRELQLGGL 300
  301 NPRMERLAND FYQMGHSMRP MLDFNVIRRF CGLAIDRRKS IAQKAGRHAH FEAWRDIINI 360
  361 EFSMRSLCQG K

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 126.568636
Match: PF03178
Description: CPSF A subunit region

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle