YRC Public Data Repository - Protein Structure Prediction

Protein:	RTT103
Organism:	Saccharomyces cerevisiae
Length:	409 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTT103.

Description	E-value	Query Range	Subject Range
gi\|73992404 - gi\|73992404\|ref\|XP_542990.2\| PREDICTED: similar to Protein C20orf77 homolog [Canis familiaris]	232.0	[0..3]	[256..155]
gi\|109506377 - gi\|109506377\|ref\|XP_214609.4\| PREDICTED: similar to cDNA sequence BC021395 [Rattus norvegicus]	215.0	[0..2]	[256..130]
YJ03_SCHPO - UPF0400 protein C337.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC337.03 PE=1 SV... SPBC337.03 - conserved eukaryotic protein	215.0	[0..1]	[249..1]
gi\|151553718, gi... - gi\|76633515\|ref\|XP_608155.2\| PREDICTED: similar to RIKEN cDNA 2610304G08 gene isoform 1 [Bos taurus]... CCDS13301.1_1 - null gi\|208966034 - gi\|208966034\|dbj\|BAG73031.1\| chromosome 20 open reading frame 77 [synthetic construct] ENSCJAT00000042298 - null RPRD1B - regulation of nuclear pre-mRNA domain containing 1B gi\|109092089, gi... - gi\|109092091\|ref\|XP_001090874.1\| PREDICTED: similar to Protein C20orf77 homolog isoform 3 [Macaca mu... gi\|114681956 - gi\|114681956\|ref\|XP_001143711.1\| PREDICTED: similar to OTTHUMP00000030953 isoform 4 [Pan troglodytes... tr\|G1SJR2\|G1SJR2... - pep:novel chromosome:oryCun2:4:2233340:2289569:-1 gene:ENSOCUG00000003450 transcript:ENSOCUT00000003... gi\|149733263 - gi\|149733263\|ref\|XP_001502456.1\| PREDICTED: similar to chromosome 20 open reading frame 77 [Equus ca...	214.0	[0..3]	[256..4]
gi\|76633523 - gi\|76633523\|ref\|XP_887366.1\| PREDICTED: similar to Protein C20orf77 homolog isoform 5 [Bos taurus]	213.0	[0..3]	[256..4]
gi\|123297012, gi... - gi\|54611187\|gb\|AAH42447.1\| Regulation of nuclear pre-mRNA domain containing 1B [Mus musculus], gi\|34... gi\|149043087 - gi\|149043087\|gb\|EDL96661.1\| similar to RIKEN cDNA 2610304G08 gene (predicted), isoform CRA_b [Rattus...	212.0	[0..3]	[256..4]
gi\|30688588, gi\|... - gi\|51536572\|gb\|AAU05524.1\| At3g26990 [Arabidopsis thaliana], gi\|30688588\|ref\|NP_189335.2\| unknown pr...	211.0	[0..3]	[238..5]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFSSEQFTT KLNTLEDSQE SISSASKWLL LQYRDAPKVA EMWKEYMLRP SVNTRRKLLG  60
   61 LYLMNHVVQQ AKGQKIIQFQ DSFGKVAAEV LGRINQEFPR DLKKKLSRVV NILKE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.988	N/A	N/A	a.118.9	ENTH/VHS domain

Predicted Domain #2

Region A:
Residues: [116-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNIFSKQVVN DIERSLKTES SPVEALVLPQ KLKDFAKDYE KLVKMHHNVC AMKMRFDKSS  60
   61 DELDPSSSVY EE

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	8.21
Match:
Description:	No description for 1l8mA was found.

Predicted Domain #3

Region A:
Residues: [188-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NFKTISKIGN MAKDIINESI LKRESGIHKL QSTLDDEKRH LDEEQNMLSE IEFVLSAKDP  60
   61 SRLNKNVDED NIIPTYEVG

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	8.21
Match:
Description:	No description for 1l8mA was found.

Predicted Domain #4

Region A:
Residues: [267-332]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGDDDDDDGD NDDDDDDDDD DKNYDDRSND SNYGVTNIST TDKKNEVVEK TDSEHKNSTH  60
   61 NPSDNQ

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	8.21
Match:
Description:	No description for 1l8mA was found.

Predicted Domain #5

Region A:
Residues: [333-409]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGMKRTHDMI GHDDANDIPE KKVHLDSKTS EDGTFNSEDG HYELDIEGHV GAQTDEGVEN  60
   61 SGGVSSSIQD LLSKLAN

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	8.21
Match:
Description:	No description for 1l8mA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits