YRC Public Data Repository - Protein Structure Prediction

Protein:	RTT103
Organism:	Saccharomyces cerevisiae
Length:	409 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTT103.

Description	E-value	Query Range	Subject Range
gi\|73992404 - gi\|73992404\|ref\|XP_542990.2\| PREDICTED: similar to Protein C20orf77 homolog [Canis familiaris]	232.0	[0..3]	[256..155]
gi\|109506377 - gi\|109506377\|ref\|XP_214609.4\| PREDICTED: similar to cDNA sequence BC021395 [Rattus norvegicus]	215.0	[0..2]	[256..130]
YJ03_SCHPO - UPF0400 protein C337.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC337.03 PE=1 SV... SPBC337.03 - conserved eukaryotic protein	215.0	[0..1]	[249..1]
gi\|151553718, gi... - gi\|76633515\|ref\|XP_608155.2\| PREDICTED: similar to RIKEN cDNA 2610304G08 gene isoform 1 [Bos taurus]... CCDS13301.1_1 - null gi\|208966034 - gi\|208966034\|dbj\|BAG73031.1\| chromosome 20 open reading frame 77 [synthetic construct] ENSCJAT00000042298 - null RPRD1B - regulation of nuclear pre-mRNA domain containing 1B gi\|109092089, gi... - gi\|109092091\|ref\|XP_001090874.1\| PREDICTED: similar to Protein C20orf77 homolog isoform 3 [Macaca mu... gi\|114681956 - gi\|114681956\|ref\|XP_001143711.1\| PREDICTED: similar to OTTHUMP00000030953 isoform 4 [Pan troglodytes... tr\|G1SJR2\|G1SJR2... - pep:novel chromosome:oryCun2:4:2233340:2289569:-1 gene:ENSOCUG00000003450 transcript:ENSOCUT00000003... gi\|149733263 - gi\|149733263\|ref\|XP_001502456.1\| PREDICTED: similar to chromosome 20 open reading frame 77 [Equus ca...	214.0	[0..3]	[256..4]
gi\|76633523 - gi\|76633523\|ref\|XP_887366.1\| PREDICTED: similar to Protein C20orf77 homolog isoform 5 [Bos taurus]	213.0	[0..3]	[256..4]
gi\|123297012, gi... - gi\|54611187\|gb\|AAH42447.1\| Regulation of nuclear pre-mRNA domain containing 1B [Mus musculus], gi\|34... gi\|149043087 - gi\|149043087\|gb\|EDL96661.1\| similar to RIKEN cDNA 2610304G08 gene (predicted), isoform CRA_b [Rattus...	212.0	[0..3]	[256..4]
gi\|30688588, gi\|... - gi\|51536572\|gb\|AAU05524.1\| At3g26990 [Arabidopsis thaliana], gi\|30688588\|ref\|NP_189335.2\| unknown pr...	211.0	[0..3]	[238..5]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFSSEQFTT KLNTLEDSQE SISSASKWLL LQYRDAPKVA EMWKEYMLRP SVNTRRKLLG  60
   61 LYLMNHVVQQ AKGQKIIQFQ DSFGKVAAEV LGRINQEFPR DLKKKLSRVV NILKE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.988	N/A	N/A	a.118.9	ENTH/VHS domain
View	Download	0.933	N/A	N/A	a.118.8	TPR-like
View	Download	0.879	N/A	N/A	a.118.8	TPR-like
View	Download	0.871	N/A	N/A	a.46.1	Methionine synthase domain
View	Download	0.870	N/A	N/A	a.118.1	ARM repeat
View	Download	0.870	N/A	N/A	a.118.1	ARM repeat
View	Download	0.862	N/A	N/A	a.118.19	Description not found.
View	Download	0.837	N/A	N/A	a.118.9	ENTH/VHS domain
View	Download	0.827	N/A	N/A	a.118.9	ENTH/VHS domain
View	Download	0.789	N/A	N/A	a.77.1	DEATH domain

Predicted Domain #2

Region A:
Residues: [116-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNIFSKQVVN DIERSLKTES SPVEALVLPQ KLKDFAKDYE KLVKMHHNVC AMKMRFDKSS  60
   61 DELDPSSSVY EE

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	8.21
Match:
Description:	No description for 1l8mA was found.

Predicted Domain #3

Region A:
Residues: [188-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NFKTISKIGN MAKDIINESI LKRESGIHKL QSTLDDEKRH LDEEQNMLSE IEFVLSAKDP  60
   61 SRLNKNVDED NIIPTYEVG

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	8.21
Match:
Description:	No description for 1l8mA was found.

Predicted Domain #4

Region A:
Residues: [267-332]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGDDDDDDGD NDDDDDDDDD DKNYDDRSND SNYGVTNIST TDKKNEVVEK TDSEHKNSTH  60
   61 NPSDNQ

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	8.21
Match:
Description:	No description for 1l8mA was found.

Predicted Domain #5

Region A:
Residues: [333-409]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGMKRTHDMI GHDDANDIPE KKVHLDSKTS EDGTFNSEDG HYELDIEGHV GAQTDEGVEN  60
   61 SGGVSSSIQD LLSKLAN

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	8.21
Match:
Description:	No description for 1l8mA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits