| Protein: | VHS1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 461 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VHS1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [47..458] | [140..524] |
|
|
0.0 | [48..459] | [61..445] |
|
|
0.0 | [46..459] | [91..476] |
|
|
0.0 | [48..458] | [69..452] |
|
|
0.0 | [43..458] | [97..485] |
|
|
0.0 | [43..458] | [97..485] |
|
Region A: Residues: [1-110] |
1 11 21 31 41 51
| | | | | |
1 MMMFHNCRIN NYLITSQIGE GAYGLVYRAL DIRTDRQYAI KAVVQSYGVS KEADMGNDKI 60
61 HKNSVKLQKK LAKLFKESKN VVRVPSIDLE SIENMSEEDF KKLPHYKEIS
|
|
Region B: Residues: [124-140] |
1 11 21 31 41 51
| | | | | |
1 IHEVLQSAVC TFIVMDY
|
| Detection Method: |  |
| Confidence: | 195.512579 |
| Match: | 1giiA_ |
| Description: | Cyclin-dependent PK, CDK2 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [111-123] |
1 11 21 31 41 51
| | | | | |
1 LHLRVHHHKN IVT
|
|
Region B: Residues: [141-208] |
1 11 21 31 41 51
| | | | | |
1 YPTDLFTSIV DNRHFVTNGL LVKKVFLQIC SALNYCHEHG IYHCDIKPEN LLLDTEDNVF 60
61 LCDFGLST
|
| Detection Method: | |
| Confidence: | 195.512579 |
| Match: | 1giiA_ |
| Description: | Cyclin-dependent PK, CDK2 |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [209-336] |
1 11 21 31 41 51
| | | | | |
1 TSTYIKPNVC IGSSYYMPPE RISFDGRVSS SKSGGHKLGK VCPSCNGDLW SLGIILINLT 60
61 CIRNPWLKAD KTEDNTYYYF TKDPNILKQI LPLSDDFYSL LSKILQVNPK NRMSLQELMK 120
121 EVSSITSF
|
| Detection Method: | |
| Confidence: | 195.512579 |
| Match: | 1giiA_ |
| Description: | Cyclin-dependent PK, CDK2 |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [337-461] |
1 11 21 31 41 51
| | | | | |
1 TNEGPLSKVP PLSKSVYEKF VSPVDNTNEN LSPKSYVYMH DSKAAKNLSY TSSSEEEDGI 60
61 KEGIDDDNGS RSGSFGTLDT DTGLHSSFTS TSCESDNECS KISNKFSLFE KKFNELRMSS 120
121 SSLTN
|
| Detection Method: | |
| Confidence: | 4.09691 |
| Match: | 1dtlA_ |
| Description: | Troponin C |
Matching Structure (courtesy of the PDB): |
|
