| Protein: | PEX5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 612 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PEX5.
| Description | E-value | Query Range |
Subject Range |
|
|
7.0E-98 | [1..612] | [1..612] |
|
|
6.0E-80 | [34..584] | [15..597] |
|
|
2.0E-79 | [166..593] | [83..502] |
|
|
3.0E-79 | [61..570] | [3..503] |
|
|
1.0E-78 | [115..593] | [12..492] |
|
|
2.0E-78 | [115..593] | [12..492] |
|
|
5.0E-74 | [4..610] | [9..599] |
|
Region A: Residues: [1-195] |
1 11 21 31 41 51
| | | | | |
1 MDVGSCSVGN NPLAQLHKHT QQNKSLQFNQ KNNGRLNESP LQGTNKPGIS EAFISNVNAI 60
61 SQENMANMQR FINGEPLIDD KRRMEIGPSS GRLPPFSNVH SLQTSANPTQ IKGVNDISHW 120
121 SQEFQGSNSI QNRNADTGNS EKAWQRGSTT ASSRFQYPNT MMNNYAYASM NSLSGSRLQS 180
181 PAFMNQQQSG RSKEG
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [196-395] |
1 11 21 31 41 51
| | | | | |
1 VNEQEQQPWT DQFEKLEKEV SENLDINDEI EKEENVSEVE QNKPETVEKE EGVYGDQYQS 60
61 DFQEVWDSIH KDAEEVLPSE LVNDDLNLGE DYLKYLGGRV NGNIEYAFQS NNEYFNNPNA 120
121 YKIGCLLMEN GAKLSEAALA FEAAVKEKPD HVDAWLRLGL VQTQNEKELN GISALEECLK 180
181 LDPKNLEAMK TLAISYINEG
|
| Detection Method: | |
| Confidence: | 525.221849 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [396-471] |
1 11 21 31 41 51
| | | | | |
1 YDMSAFTMLD KWAETKYPEI WSRIKQQDDK FQKEKGFTHI DMNAHITKQF LQLANNLSTI 60
61 DPEIQLCLGL LFYTKD
|
| Detection Method: | |
| Confidence: | 525.221849 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| peroxisome targeting sequence binding | 6.28836842401449 | bayes_pls_golite062009 |
| peroxisome matrix targeting signal-1 binding | 5.30441166392789 | bayes_pls_golite062009 |
| binding | 2.14253214573541 | bayes_pls_golite062009 |
| protein binding | 1.83529176977066 | bayes_pls_golite062009 |
| signal sequence binding | 1.13935627118933 | bayes_pls_golite062009 |
|
Region A: Residues: [472-531] |
1 11 21 31 41 51
| | | | | |
1 DFDKTIDCFE SALRVNPNDE LMWNRLGASL ANSNRSEEAI QAYHRALQLK PSFVRARYNL 60
61
|
| Detection Method: | |
| Confidence: | 525.221849 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [532-612] |
1 11 21 31 41 51
| | | | | |
1 AVSSMNIGCF KEAAGYLLSV LSMHEVNTNN KKGDVGSLLN TYNDTVIETL KRVFIAMNRD 60
61 DLLQEVKPGM DLKRFKGEFS F
|
| Detection Method: | |
| Confidence: | 525.221849 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
