| Protein: | SIR4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1358 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SIR4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1358] | [1..1358] |
|
Region A: Residues: [1-123] |
1 11 21 31 41 51
| | | | | |
1 MPNDNKTPNR SSTPKFTKKP VTPNDKIPER EEKSNEVKTP KIPLFTFAKS KNYSRPSTAI 60
61 HTSPHQPSDV KPTSHKQLQQ PKSSPLKKNN YNSFPHSNLE KISNSKLLSL LRSKTSAGRI 120
121 ESN
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [124-1358] |
1 11 21 31 41 51
| | | | | |
1 NPSHDASRSL ASFEQTAFSR HAQQQTSTFN SKPVRTIVPI STSQTNNSFL SGVKSLLSEE 60
61 KIRDYSKEIL GINLANEQPV LEKPLKKGSA DIGASVISLT KDKSIRKDTV EEKKEEKLNI 120
121 GKNFAHSDSL SVPKVSAGDS GISPEESKAR SPGIAKPNAI QTEVYGINEE STNERLEINQ 180
181 EKPVKLDENS ANSTVASALD TNGTSATTET LTSKKIVPSP KKVAIDQDKI TLHDEKTLAP 240
241 SKHQPITSEQ KMKEDADLKR MEILKSPHLS KSPADRPQGR RNSRNFSTRD EETTKLAFLV 300
301 EYEGQENNYN STSRSTEKKN DMNTSAKNKN GENKKIGKRP PEIMSTEAHV NKVTEETTKQ 360
361 IQSVRIDGRK VLQKVQGESH IDSRNNTLNV TPSKRPQLGE IPNPMKKHKP NEGRTPNISN 420
421 GTINIQKKLE PKEIVRDILH TKESSNEAKK TIQNPLNKSQ NTALPSTHKV TQKKDIKIGT 480
481 NDLFQVESAP KISSEIDREN VKSKDEPVSK AVESKSLLNL FSNVLKAPFI KSESKPFSSD 540
541 ALSKEKANFL ETIASTEKPE NKTDKVSLSQ PVSASKHEYS DNFPVSLSQP SKKSFANHTE 600
601 DEQIEKKKIC RGRMNTIITH PGKMELVYVS DSDDSSSDND SLTDLESLSS GESNEIKVTN 660
661 DLDTSAEKDQ IQAGKWFDPV LDWRKSDREL TKNILWRIAD KTTYDKETIT DLIEQGIPKH 720
721 SYLSGNPLTS VTNDICSVEN YETSSAFFYQ QVHKKDRLQY LPLYAVSTFE NTNNTEKNDV 780
781 TNKNINIGKH SQEQNSSSAK PSQIPTVSSP LGFEETKLST TPTKSNRRVS HSDTNSSKPK 840
841 NTKENLSKSS WRQEWLANLK LISVSLVDEF PSELSDSDRQ IINEKMQLLK DIFANNLKSA 900
901 ISNNFRESDI IILKGEIEDY PMSSEIKIYY NELQNKPDAK KARFWSFMKT QRFVSNMGFD 960
961 IQKSCEPVSI STSVKPHVVE PEHMADAKIM PKDILQITKK PLMVKNVKPS SPPDVKSLVQ1020
1021 LSTMETKTLP EKKQFDSIFN SNKAKIIPGN GKHASENISL SFSRPASYGY FSVGKRVPIV1080
1081 EDRRVKQLDD ITDSNTTEIL TSVDVLGTHS QTGTQQSNMY TSTQKTELEI DNKDSVTECS1140
1141 KDMKEDGLSF VDIVLSKAAS ALDEKEKQLA VANEIIRSLS DEVMRNEIRI TSLQGDLTFT1200
1201 KKCLENARSQ ISEKDAKINK LMEKDFQVNK EIKPY
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [277-390] |
1 11 21 31 41 51
| | | | | |
1 IAKPNAIQTE VYGINEESTN ERLEINQEKP VKLDENSANS TVASALDTNG TSATTETLTS 60
61 KKIVPSPKKV AIDQDKITLH DEKTLAPSKH QPITSEQKMK EDADLKRMEI LKSP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [391-444] |
1 11 21 31 41 51
| | | | | |
1 HLSKSPADRP QGRRNSRNFS TRDEETTKLA FLVEYEGQEN NYNSTSRSTE KKND
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [445-659] |
1 11 21 31 41 51
| | | | | |
1 MNTSAKNKNG ENKKIGKRPP EIMSTEAHVN KVTEETTKQI QSVRIDGRKV LQKVQGESHI 60
61 DSRNNTLNVT PSKRPQLGEI PNPMKKHKPN EGRTPNISNG TINIQKKLEP KEIVRDILHT 120
121 KESSNEAKKT IQNPLNKSQN TALPSTHKVT QKKDIKIGTN DLFQVESAPK ISSEIDRENV 180
181 KSKDEPVSKA VESKSLLNLF SNVLKAPFIK SESKP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [660-784] |
1 11 21 31 41 51
| | | | | |
1 FSSDALSKEK ANFLETIAST EKPENKTDKV SLSQPVSASK HEYSDNFPVS LSQPSKKSFA 60
61 NHTEDEQIEK KKICRGRMNT IITHPGKMEL VYVSDSDDSS SDNDSLTDLE SLSSGESNEI 120
121 KVTND
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [785-924] |
1 11 21 31 41 51
| | | | | |
1 LDTSAEKDQI QAGKWFDPVL DWRKSDRELT KNILWRIADK TTYDKETITD LIEQGIPKHS 60
61 YLSGNPLTSV TNDICSVENY ETSSAFFYQQ VHKKDRLQYL PLYAVSTFEN TNNTEKNDVT 120
121 NKNINIGKHS QEQNSSSAKP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [925-1081] |
1 11 21 31 41 51
| | | | | |
1 SQIPTVSSPL GFEETKLSTT PTKSNRRVSH SDTNSSKPKN TKENLSKSSW RQEWLANLKL 60
61 ISVSLVDEFP SELSDSDRQI INEKMQLLKD IFANNLKSAI SNNFRESDII ILKGEIEDYP 120
121 MSSEIKIYYN ELQNKPDAKK ARFWSFMKTQ RFVSNMG
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1082-1201] |
1 11 21 31 41 51
| | | | | |
1 FDIQKSCEPV SISTSVKPHV VEPEHMADAK IMPKDILQIT KKPLMVKNVK PSSPPDVKSL 60
61 VQLSTMETKT LPEKKQFDSI FNSNKAKIIP GNGKHASENI SLSFSRPASY GYFSVGKRVP 120
121
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1202-1358] |
1 11 21 31 41 51
| | | | | |
1 IVEDRRVKQL DDITDSNTTE ILTSVDVLGT HSQTGTQQSN MYTSTQKTEL EIDNKDSVTE 60
61 CSKDMKEDGL SFVDIVLSKA ASALDEKEKQ LAVANEIIRS LSDEVMRNEI RITSLQGDLT 120
121 FTKKCLENAR SQISEKDAKI NKLMEKDFQV NKEIKPY
|
| Detection Method: | |
| Confidence: | 78.69897 |
| Match: | 1nyhA |
| Description: | Dimerization motif of sir4 |
Matching Structure (courtesy of the PDB): |
|
