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View Structure Prediction Details

Protein: HTB1
Organism: Saccharomyces cerevisiae
Length: 131 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HTB1.

Description E-value Query
Range
Subject
Range
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
2.0E-49 [14..129] [5..122]
gi|15030326, gi|... - gi|15030326|gb|AAH11440.1| LOC665622 protein [Mus musculus], gi|148700679|gb|EDL32626.1| mCG50238, i...
7.0E-49 [7..128] [2..125]
gi|149617766, gi... - gi|149617828|ref|XP_001514740.1| PREDICTED: similar to histone H2B [Ornithorhynchus anatinus], gi|14...
gi|55626088 - gi|55626088|ref|XP_518302.1| PREDICTED: similar to H2B histone family, member F [Pan troglodytes]
gi|167774133 - gi|167774133|gb|ABZ92501.1| histone cluster 1, H2bo [synthetic construct]
HIST1H2BO - histone cluster 1, H2bo
2.0E-48 [7..129] [2..126]
H2B8_CHICK - Histone H2B 8 OS=Gallus gallus GN=H2B-VIII PE=1 SV=3
gi|224094548 - gi|224094548|ref|XP_002193403.1| PREDICTED: similar to histone 1, H2bn (predicted) [Taeniopygia gutt...
2.0E-48 [7..129] [2..126]

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Predicted Domain #1
Region A:
Residues: [1-131]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKAEKKPA SKAPAEKKPA AKKTSTSTDG KKRSKARKET YSSYIYKVLK QTHPDTGISQ  60
   61 KSMSILNSFV NDIFERIATE ASKLAAYNKK STISAREIQT AVRLILPGEL AKHAVSEGTR 120
  121 AVTKYSSSTQ A

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 426.124002
Match: 1id3D_
Description: Histone H2B
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle