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View Structure Prediction Details

Protein: MFB1
Organism: Saccharomyces cerevisiae
Length: 465 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MFB1.

Description E-value Query
Range
Subject
Range
gi|49525203 - gi|49525203|emb|CAG58816.1| unnamed protein product [Candida glabrata]
gi|50286935, gi|... - gi|50286935|ref|XP_445897.1| unnamed protein product [Candida glabrata], gi|49525203|emb|CAG58816.1|...
156.0 [0..16] [440..13]
gi|44986127, gi|... - gi|45201273|ref|NP_986843.1| AGR177Cp [Ashbya gossypii ATCC 10895], gi|44986127|gb|AAS54667.1| AGR17...
gi|44986127 - gi|44986127|gb|AAS54667.1| AGR177Cp [Ashbya gossypii ATCC 10895]
76.0 [0..13] [150..3]
gi|49644808 - gi|49644808|emb|CAG98380.1| KLLA0F13156p [Kluyveromyces lactis]
gi|50311295, gi|... - gi|50311295|ref|XP_455672.1| unnamed protein product [Kluyveromyces lactis], gi|49644808|emb|CAG9838...
72.0 [0..146] [439..254]

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Predicted Domain #1
Region A:
Residues: [1-126]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLFSCSVQM PLEERSLTNL PLNLLFRILS HLDMNDLQNI GKTCTLLRML ANENIVYRNA  60
   61 VIGSNGNMWW TKNVLVDVFD VLNFNRKAMK TLNSHNISLV ASLRNVQRKY KLGVIDPARK 120
  121 TISYRT

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 4.29243
Match: PF00646
Description: F-box domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [127-465]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEVESKEKGS VKDLNMDLNE PTEITREQIA HTAILQGMNQ FIELNDKAFR THSADSDDTY  60
   61 IEENNGEIHS LHGLEKNTTF EEDLVKKPPF IPSPTFSNYS RSSTNSVFSS SSPKLLDDDW 120
  121 NNITMDFTKS RDPDYKEMTP TSTESSDSIT RLRKSNKVKD KAELFEKLIF RDSRPLKTKK 180
  181 KDNPRLKLSS SLSANDEDFR KIISPPSDIL PKVGRRSVSR GYLEEIERHY PDFNGETTNP 240
  241 LAIKRVNSTK IANYEQLIIK ENSSNCKGIT EKNDENKFQR SHTSPVIELS KPHQRSKLKA 300
  301 VVTDGNKICY RKIELDNPSG SNTNDHVIKR LDANTDFNI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle