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View Structure Prediction Details

Protein: MFB1
Organism: Saccharomyces cerevisiae
Length: 465 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MFB1.

Description E-value Query
Range
Subject
Range
gi|49525203 - gi|49525203|emb|CAG58816.1| unnamed protein product [Candida glabrata]
gi|50286935, gi|... - gi|50286935|ref|XP_445897.1| unnamed protein product [Candida glabrata], gi|49525203|emb|CAG58816.1|...
156.0 [0..16] [440..13]
gi|44986127, gi|... - gi|45201273|ref|NP_986843.1| AGR177Cp [Ashbya gossypii ATCC 10895], gi|44986127|gb|AAS54667.1| AGR17...
gi|44986127 - gi|44986127|gb|AAS54667.1| AGR177Cp [Ashbya gossypii ATCC 10895]
76.0 [0..13] [150..3]
gi|49644808 - gi|49644808|emb|CAG98380.1| KLLA0F13156p [Kluyveromyces lactis]
gi|50311295, gi|... - gi|50311295|ref|XP_455672.1| unnamed protein product [Kluyveromyces lactis], gi|49644808|emb|CAG9838...
72.0 [0..146] [439..254]

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Predicted Domain #1
Region A:
Residues: [1-126]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLFSCSVQM PLEERSLTNL PLNLLFRILS HLDMNDLQNI GKTCTLLRML ANENIVYRNA  60
   61 VIGSNGNMWW TKNVLVDVFD VLNFNRKAMK TLNSHNISLV ASLRNVQRKY KLGVIDPARK 120
  121 TISYRT

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 4.29243
Match: PF00646
Description: F-box domain

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.676 N/A N/A a.121.1 Tetracyclin repressor-like, C-terminal domain
View Download 0.650 N/A N/A a.45.1 Glutathione S-transferase (GST), C-terminal domain
View Download 0.650 N/A N/A a.45.1 Glutathione S-transferase (GST), C-terminal domain
View Download 0.643 N/A N/A a.24.22 Description not found.
View Download 0.607 N/A N/A a.25.1 Ferritin-like
View Download 0.583 N/A N/A a.24.10 Histidine-containing phosphotransfer domain, HPT domain
View Download 0.583 N/A N/A a.24.10 Histidine-containing phosphotransfer domain, HPT domain
View Download 0.546 N/A N/A a.5.4 Elongation factor TFIIS domain 2
View Download 0.533 N/A N/A a.24.3 Cytochromes

Predicted Domain #2
Region A:
Residues: [127-465]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEVESKEKGS VKDLNMDLNE PTEITREQIA HTAILQGMNQ FIELNDKAFR THSADSDDTY  60
   61 IEENNGEIHS LHGLEKNTTF EEDLVKKPPF IPSPTFSNYS RSSTNSVFSS SSPKLLDDDW 120
  121 NNITMDFTKS RDPDYKEMTP TSTESSDSIT RLRKSNKVKD KAELFEKLIF RDSRPLKTKK 180
  181 KDNPRLKLSS SLSANDEDFR KIISPPSDIL PKVGRRSVSR GYLEEIERHY PDFNGETTNP 240
  241 LAIKRVNSTK IANYEQLIIK ENSSNCKGIT EKNDENKFQR SHTSPVIELS KPHQRSKLKA 300
  301 VVTDGNKICY RKIELDNPSG SNTNDHVIKR LDANTDFNI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle